agshumate/Liftoff

conda installation

Closed this issue · 1 comments

Hi,

I am trying to install via conda but am encountering the following error:

$ conda create -n liftoff -c bioconda liftoff
Collecting package metadata (current_repodata.json): done
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: | 
Found conflicts! Looking for incompatible packages.
This can take several minutes.  Press CTRL-C to abort.
failed                                                                                                                          

UnsatisfiableError: The following specifications were found to be incompatible with each other:



Package pyfaidx conflicts for:
liftoff -> pyfaidx[version='>=0.5.8']
Package python conflicts for:
liftoff -> python[version='>=3']
Package ujson conflicts for:
liftoff -> ujson
Package biopython conflicts for:
liftoff -> biopython[version='>=1.76']
Package pysam conflicts for:
liftoff -> pysam[version='>=0.16.0.1']
Package gffutils conflicts for:
liftoff -> gffutils[version='>=0.10.1']
Package interlap conflicts for:
liftoff -> interlap[version='>=0.2.6']
Package networkx conflicts for:
liftoff -> networkx[version='>=2.4']
Package minimap2 conflicts for:
liftoff -> minimap2
Package numpy conflicts for:
liftoff -> numpy[version='>=1.19.0']

The error is the same on CentOS and macOS.

This is the same error reported in #41 - I will try other installation options, but the conda recipe still appears to be broken.

Thanks!

Looks like this can be resolved by adding conda-forge channel to command:
conda create -n liftoff -c bioconda -c conda-forge liftoff
Marking as closed. Thanks again!