ainarill/RNASeqLockHolmes

Issues

• fix/adapt volcano plot

  #22 opened 5 years ago by luisas
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• DecideTests --> Not understandig why with sv so much higher the up/down

  #21 opened 5 years ago by luisas
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• does it make sense to do the sva for patient id ?

  #20 opened 5 years ago by luisas
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• gsea tumor copy pipeline and redactar

  #19 opened 5 years ago by luisas
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• GSEA PIPELINE ( PAIRED ) and redactar

  #18 opened 5 years ago by luisas
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• FE tumor : copy pipeline and redactar

  #17 opened 5 years ago by luisas
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• gene not on the right? If not solved - ask!

  #16 opened 5 years ago by luisas
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• FE redactar primera parte

  #15 opened 5 years ago by luisas
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• Why mean variance ?

  #14 opened 5 years ago by luisas
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• Find out FDR or ask

  #13 opened 5 years ago by luisas
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• DE paired: fix small things - axis , chr

  #12 opened 5 years ago by luisas
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• DE tumor: design matrix with different factors and small motivation - vulcano plot

  #11 opened 5 years ago by luisas
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• QA: batch tumor question

  #10 opened 5 years ago by luisas
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• QA: filter lowly expressed genes systematically ( or not )

  #9 opened 5 years ago by luisas
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• Find main mechanisms of interest based on papers

  #4 opened 6 years ago by luisas
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• Diferential expression analysis of RNA-seq data

  #3 opened 6 years ago by ainarill
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• Experimental design & batch e!ect identification

  #2 opened 6 years ago by ainarill
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• Quality assessment and normalization of RNA- seq data

  #1 opened 6 years ago by ainarill
  0