`asv compare` can create broken markdown tables when a parameter’s repr is multiple lines
flying-sheep opened this issue · 1 comments
flying-sheep commented
E.g. I currently see:
| Change | Before [c68557c5] <main> | After [055b5c56] | Ratio | Benchmark (Parameter) |
|----------|----------------------------|---------------------|---------|-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|
| - | 217M | 194M | 0.89 | preprocessing.PreprocessingSuite.peakmem_calculate_qc_metrics(AnnData object with n_obs × n_vars = 700 × 765
obs: 'bulk_labels', 'n_genes', 'percent_mito', 'n_counts', 'S_score', 'G2M_score', 'phase', 'louvain'
var: 'n_counts', 'means', 'dispersions', 'dispersions_norm', 'highly_variable'
uns: 'bulk_labels_colors', 'louvain', 'louvain_colors', 'neighbors', 'pca', 'rank_genes_groups'
obsm: 'X_pca', 'X_umap'
varm: 'PCs'
obsp: 'distances', 'connectivities') |
which isn’t valid markdown.
The problem in fixing this is is that tabulate
seems unmaintained, and there is no community fork yet: astanin/python-tabulate#281
So we can’t expect that project to release a fix soon.
HaoZeke commented
Seems like https://github.com/hvalev/py-markdown-table might be useful here.