ajinocean

ajinocean's Stars

• googlehosts/hosts

  镜像：https://scaffrey.coding.net/p/hosts/git / https://git.qvq.network/googlehosts/hosts

  20.8k1.3k43010.2k

• google-deepmind/alphafold

  Open source code for AlphaFold 2.

  Language:Python13k2288662.3k

• TencentARC/PhotoMaker

  PhotoMaker [CVPR 2024]

  Language:Jupyter Notebook9.6k102163769

• satijalab/seurat

  R toolkit for single cell genomics

  Language:R2.3k768.1k922

• pachterlab/kallisto

  Near-optimal RNA-Seq quantification

  Language:C66548374173

• immunogenomics/harmony

  Fast, sensitive and accurate integration of single-cell data with Harmony

  Language:R5372722598

• CGATOxford/UMI-tools

  Tools for handling Unique Molecular Identifiers in NGS data sets

  Language:Python49436500190

• aertslab/pySCENIC

  pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.

  Language:Python45518546184

• aristoteleo/dynamo-release

  Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses

  Language:Python4281025959

• Teichlab/cellphonedb

  Language:Python34618267105

• ventolab/CellphoneDB

  CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.

  Language:Jupyter Notebook3401019654

• ncborcherding/scRepertoire

  A toolkit for single-cell immune profiling

  Language:R3111237555

• DeepRank/deeprank

  This repository has been integrated in https://github.com/DeepRank/deeprank2

  Language:Python1471416726

• immunogenomics/symphony

  Efficient and precise single-cell reference atlas mapping with Symphony

  Language:Jupyter Notebook100154822

• ggjlab/scMCA

  Mouse cell atlas

  Language:R599417

• akiyamalab/MEGADOCK

  An ultra-high-performance protein-protein docking for heterogeneous supercomputers

  Language:C++5141032

• data2intelligence/CytoSig

  Language:Python4611411

• eQTL-Catalogue/eQTL-Catalogue-resources

  Language:HTML4443135

• aertslab/SCopeLoomR

  R package (compatible with SCope) to create generic .loom files and extend them with other data e.g.: SCENIC regulons, Seurat clusters and markers, ...

  Language:R40113715

• DeepRank/iScore

  iScore: an MPI supported software for ranking protein-protein docking models based on a random walk graph kernel and support vector machines

  Language:Python2742411

• immunogenomics/amp_phase1_ra

  :ear_of_rice: Zhang, et al, Nature Immunology, 2019. Use single-cell transcriptomics and proteomics to study autoimmune diseases.

  Language:Jupyter Notebook207113

• lhuang1/Th17_single_cell

  Language:R12103

• Mangul-Lab-USC/pyTCR

  Language:Jupyter Notebook11233

• campbio/scruff

  Single Cell RNA-seq UMI Filtering Facilitator

  Language:R83109

• ay-lab/SLE-mWGCNA

  Multi-cell type gene co-expression network analysis reveals coordinated interferon response and cross cell-type correlations in SLE

  320

• immunogenomics/cna-display

  Generation of display items for CNA paper

  Language:Jupyter Notebook3301

• ajinocean/AgTCV

  We developed a specific Antigen-specific T Cell Vaccine (AgTCV) significantly alleviated inflammation, cartilage damage, and bone erosion in Rheumatoid Arthritis (RA) . Single-cell RNA sequencing analysis revealed the previously unrecognized role of neutrophils in remodeling the immune tolerance.

  Language:Jupyter Notebook1100

• ajinocean/RA-treatment-resistant

  This repository contains codes related the results about the research of Single-Cell Profiling Changes Associated with Drug Resistance and Disease Progression to Methotrexate and Anti-TNF Therapies in Rheumatoid Arthritis

  1100

• fanzhanglab/singlecell_functions

  We implemented and generalized single-cell functions and targeted analytical code for single-cell omics data analysis.

  Language:Jupyter Notebook1102

• mmanohara/CAR-T-cell-modeling-project

  Language:Python100