alan-turing-institute/affinity-vae

Issues

• Affinity matrix visualisation fails with matplotlib 3.9.0

  #312 opened 7 months ago by jolaem
  0

• new_out produces error if file full path not declared

  #273 opened 7 months ago by marjanfamili
  0

• Command line flags not overwriting config file

  #307 opened 7 months ago by crangelsmith
  0

• Saved output file is ready for inmediate use in a new run

  #308 opened 7 months ago by crangelsmith
  0

• numerous warnings in the output of the evaluation mode

  #284 opened 8 months ago by marjanfamili
  1

• Warning repeatedly appearing in output

  #206 opened 8 months ago by marjanfamili
  1

• Improve README

  #306 opened 8 months ago by crangelsmith
  0

• Configurable choice for latent space visualisation

  #209 opened 8 months ago by crangelsmith
  1

• Can we suppress this NN classifier warning?

  #216 opened 8 months ago by jolaem
  1

• Can we sort the F1 scores in the plot?

  #221 opened 8 months ago by jolaem
  1

• Affinity matrix plot has white space

  #247 opened 8 months ago by marjanfamili
  1

• Accuracy for KNN fails with smaller number of samples

  #232 opened 8 months ago by jolaem
  1

• Warnings

  #250 opened 8 months ago by crangelsmith
  0

• bug when vis_all : False

  #262 opened 8 months ago by marjanfamili
  5

• Evaluation incorrectly picks out pose dim from model name

  #266 opened 8 months ago by jolaem
  2

• Affinity error in evaluation mode

  #274 opened 8 months ago by marjanfamili
  1

• Error when pose_vis_class is not specified

  #275 opened 8 months ago by marjanfamili
  1

• Eval flag in input file not registered

  #276 opened 8 months ago by marjanfamili
  1

• Napari for pose dimentions > 3

  #270 opened 8 months ago by crangelsmith
  0

• Data and model paralelisation for optimal training

  #278 opened 8 months ago by crangelsmith
  0

• save plots as pdf or png

  #294 opened 8 months ago by marjanfamili
  0

• Refactoring of the codebase

  #296 opened 10 months ago by crangelsmith
  0

• Consider binarizing the weights in the splat decoder

  #302 opened 10 months ago by quantumjot
  1

• last state and meta not selected correctly in Eval

  #285 opened 10 months ago by marjanfamili
  0

• pydantic not allowing pose_dims value to be zero

  #289 opened 10 months ago by marjanfamili
  0

• model A, not accepting pose_dims = 0

  #290 opened 10 months ago by marjanfamili
  0

• eval mode throwing error for pose_dims = 0

  #291 opened 10 months ago by marjanfamili
  0

• Visualisations don't always check if plots directory exists

  #246 opened a year ago by jolaem
  0

• New interpolation plot fails with pose=0

  #265 opened a year ago by jolaem
  0

• specific frequencies to overwrite freq_all

  #256 opened a year ago by marjanfamili
  0

• Umap embedding fails due to uninitialised variable

  #261 opened a year ago by jolaem
  3

• Per-class pose visualisation fails when `VIS_POSE_CLASS` is `None`

  #268 opened a year ago by jolaem
  0

• Add tests for the pipeline and the model containing Gaussian splat decoder

  #281 opened a year ago by marjanfamili
  0

• Updated toml file for different systems

  #271 opened a year ago by crangelsmith
  0

• Implement type hints

  #239 opened a year ago by crangelsmith
  0

• Example dataset to run affinity VAE

  #218 opened a year ago by crangelsmith
  1

• Config accepts parameters that do not exist

  #233 opened a year ago by jolaem
  2

• Napari plugin

  #258 opened a year ago by crangelsmith
  0

• Move to toml based setup

  #238 opened a year ago by crangelsmith
  0

• remove batch processing from visualisation functions

  #260 opened a year ago by marjanfamili
  0

• Channels hyperparameter is hardcoded in model A

  #223 opened a year ago by jolaem
  1

• Evaluation should check if data dimension is compatible with model

  #267 opened a year ago by jolaem
  0

• Typo in Tutorial (---new_out)

  #263 opened a year ago by moi-taiga
  1

• Abstract encoder - decoder

  #240 opened a year ago by crangelsmith
  0

• Consolidate embedding code

  #244 opened a year ago by jolaem
  0

• Per-class pose visualisation fails when using default value from config

  #234 opened a year ago by jolaem
  0

• selection of encodings for pose and latent interpolation

  #236 opened a year ago by marjanfamili
  0

• Pose class disentanglement plot not working

  #228 opened a year ago by jolaem
  3

• 2D image preview in dynamic plots is incorrectly summed

  #225 opened a year ago by jolaem
  0

• Rescale always applied and causing issues

  #220 opened a year ago by crangelsmith
  0