Pinned Repositories
basicsworkflow2020-docker
BASiCS docker image
bayefdr
Bayesian estimation and optimisation of expected FDR and expected FNR
color-oracle-java
color-oracle-java
contrast
R contrast package
d3heatmap
A D3.js-based heatmap htmlwidget for R
densvis
R package implementing the density-preserving data visualization tools den-SNE and densMAP
plotlyutils
Some functions and HTMLwidgets for the creation of browser-based plots using plotly.js and the R plotly API.
scater
Clone of the Bioconductor repository for the scater package.
snifter
R wrapper for the python openTSNE library
heatmaply
Interactive Heat Maps for R Using plotly
alanocallaghan's Repositories
alanocallaghan/scater
Clone of the Bioconductor repository for the scater package.
alanocallaghan/densvis
R package implementing the density-preserving data visualization tools den-SNE and densMAP
alanocallaghan/groovy-language-server
A language server for Groovy
alanocallaghan/scalability_benchmarks
Benchmarks for scalability code
alanocallaghan/aicsimageio
Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
alanocallaghan/Alanocallaghan
alanocallaghan/Alanocallaghan.github.io
alanocallaghan/c-blosc-jars
JAR files for the c-blosc native library.
alanocallaghan/dotfiles
My dot files
alanocallaghan/high-dimensional-stats-r
High-dimensional statistics with R
alanocallaghan/homebrew-cask
🍻 A CLI workflow for the administration of macOS applications distributed as binaries
alanocallaghan/i2k-qupath-for-python-programmers
alanocallaghan/iheatmapr
Complex, interactive heatmaps in R
alanocallaghan/indexes
qupath extension indexes
alanocallaghan/instanseg
alanocallaghan/microjson
alanocallaghan/openslide-jars
alanocallaghan/qubalab
Lab for quantitative bioimage analysis experiments in Python
alanocallaghan/qupath
QuPath - Bioimage analysis & digital pathology
alanocallaghan/qupath-bioimageio-spec
Support for parsing the BioImage Model Zoo spec in Java
alanocallaghan/qupath-docs
QuPath documentation
alanocallaghan/qupath-downloader-linux
Downloads arbitrary qupath releases and stores them with bare version names
alanocallaghan/qupath-extension-instanseg
The official QuPath extension for InstanSeg
alanocallaghan/qupath-extension-template
Template to help create a new QuPath extension
alanocallaghan/qupath-extension-wsinfer
QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/
alanocallaghan/qupath-fxtras
Reusable JavaFX tools for QuPath (and beyond)
alanocallaghan/qupath-scripting-setups
alanocallaghan/qust
QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis
alanocallaghan/seurat
R toolkit for single cell genomics
alanocallaghan/temp_conversion
C temperature conversion CL app