alegione
Microbiology/virology, Faculty of Science, University of Melbourne. Bashing together pipelines, and making my Excel look Shiny
University of Melbourne, Australia
Pinned Repositories
alegione.github.io
The academic website of Dr Alistair Legione
alegione.github.io_old
My personal website
bash-pipelines
A bunch of bash scripts, R scripts that they use, and other docs. Many are computer specific and not useful for others.
Lab_calculators
A collection of R shiny apps for various calculators
MAGsim
Scripts for testing several alignment tools for metagenomic assemblies
NanoDropPlotter
A tool to view multiple NanoDrop results
NBA-Game-Of-The-Day
A shiny web application that ranks daily NBA games for your viewing pleasure
pydeel
R-web-scrape
ScholarPlot
Shiny web tool for visualising and exporting google scholar data
alegione's Repositories
alegione/NBA-Game-Of-The-Day
A shiny web application that ranks daily NBA games for your viewing pleasure
alegione/alegione.github.io
The academic website of Dr Alistair Legione
alegione/alegione.github.io_old
My personal website
alegione/bash-pipelines
A bunch of bash scripts, R scripts that they use, and other docs. Many are computer specific and not useful for others.
alegione/Lab_calculators
A collection of R shiny apps for various calculators
alegione/MAGsim
Scripts for testing several alignment tools for metagenomic assemblies
alegione/NanoDropPlotter
A tool to view multiple NanoDrop results
alegione/pydeel
alegione/R-web-scrape
alegione/ScholarPlot
Shiny web tool for visualising and exporting google scholar data
alegione/biodemo
A demo project (melbourne bioinformatics workshop)
alegione/CodonShuffle
alegione/DivProPipe
alegione/DumplingSquid
Classify metagenomic reads based on miniture databases
alegione/homebrew-bioinformatics-linux
:beer: :penguin: Homebrew formulae for bioinformatics software only available for Linux
alegione/HPC_classifier
A place to put scripts for classification of long reads using the Unimelb Spartan high performance computer
alegione/HPCshells
Advanced Linux commands, regular expressions, shell scripting, and their integration into SLURM scripts.
alegione/ideel
Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes
alegione/MapGraph
Some scripts for plotting depth of read coverage against references
alegione/MicroLabR
A complilation of tools useful for a microbiology laboratory
alegione/office-macros
A collection of macros for microsoft office
alegione/pharokka-gcode
fast phage annotation program
alegione/Porechop
adapter trimmer for Oxford Nanopore reads
alegione/PythonTraining
alegione/qiime
Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.
alegione/simple_site
Minimal tutorial on making a simple website with GitHub Pages
alegione/srst2
Short Read Sequence Typing for Bacterial Pathogens
alegione/Trycycler
A tool for generating consensus long-read assemblies for bacterial genomes
alegione/Unicycler-gcode
hybrid assembly pipeline for bacterial genomes
alegione/Vet_Help
Calculation tools for vets