alexholehouse
Assistant Professor of Biophysics @ Washington University School of Medicine - we study how function is encoded into intrinsically disordered protein regions.
Washington University School of MedicineSaint Louis, MO
Pinned Repositories
Geeneus
Simple base-type based API for the NCBI databases
pdb2fasta
Take a PDB file and spit out protein sequence in 3 or 1 letter format
pufferfish
Super simple, super lightweight dna compression tool
SBMLIntegrator
SBML model editor and integrator - *very* much in alpha
unpack
A simple perl script which provides a command line interface unifying all the various unpacking mechanisms for common compression/archive formats on Linux
protfasta
Simple but robust parser for protein-based FASTA files
shephard
Sequence-based Hierarchical and Extendable Platform for High-throughput Analysis of Region of Disorder
soursop
soursop is an analysis suite for all-atom simulations of disordered proteins. NOTE soursop used to be called camparitraj...
metapredict
A machine learning based protein disorder predictor.
alexholehouse's Repositories
alexholehouse/pufferfish
Super simple, super lightweight dna compression tool
alexholehouse/pdb2fasta
Take a PDB file and spit out protein sequence in 3 or 1 letter format
alexholehouse/Geeneus
Simple base-type based API for the NCBI databases
alexholehouse/SBMLIntegrator
SBML model editor and integrator - *very* much in alpha
alexholehouse/unpack
A simple perl script which provides a command line interface unifying all the various unpacking mechanisms for common compression/archive formats on Linux
alexholehouse/gromacs
Public/backup repository of the gromacs molecular simulation toolkit
alexholehouse/l1ktools
Software tools to analyze data produced from the L1000 project
alexholehouse/shanent
Official repository for the ShanEnt analysis package
alexholehouse/spark
▁▂▃▅▂▇ in your shell.
alexholehouse/autoQ
Wrapper around PBS/SGE type queuing systems to automatically resubmit jobs
alexholehouse/biotools
Collection of bioinformatics tools
alexholehouse/BME
Integrating Molecular Simulation and Experimental Data
alexholehouse/CAMeLOT
Generalized implementation of CAMeLot
alexholehouse/cli
My command line interface tools for python projects
alexholehouse/cython
The most widely used Python to C compiler
alexholehouse/dotfiles
alexholehouse/enspara
Modeling molecular ensembles with scalable data structures and parallel computing
alexholehouse/mdtraj
A modern, open library for the analysis of molecular dynamics trajectories
alexholehouse/molssi_develop_2019
molssi 2019 tutorial
alexholehouse/molssi_devops_2019
Package for 2019 workshop!
alexholehouse/papers
Material from papers from KULL centre
alexholehouse/pdbParser
Robust parsing API for PDB files
alexholehouse/proteomeScoutAPI
Python API to access ProteomeScout flatfiles [proteomescout.wustl.edu]
alexholehouse/psfmi
psfmi: Predictor Selection Functions for Logistic and Cox regression models in multiply imputed datasets
alexholehouse/pyTANGO
Python wrapper around the aggregation propensity prediction tool TANGO for Linux usage
alexholehouse/rscode
Python script used to identify RS-rich domains
alexholehouse/stackedBarGraph
stackedBarGraph
alexholehouse/systools
General system tools
alexholehouse/TranTools
Collection of Python command line tools for exploring and describing Fortran code
alexholehouse/trjmutator
Allows mutation of a specific residue in a .xtc trajectory file to glycine