json.decoder.JSONDecodeError
Closed this issue · 2 comments
nick-youngblut commented
As in the README, I created a jupyter_config.json file in the jupyter --config-dir, and as a test, I added:
{
"CondaKernelSpecManager": {
"env_filter": "regex"
}
... which produced the following error:
Traceback (most recent call last):
File "/ebio/abt3_projects/software/miniconda3/envs/jupyter-nb/lib/python3.6/site-packages/traitlets/config/application.py", line 563, in _load_config_files
config = loader.load_config()
File "/ebio/abt3_projects/software/miniconda3/envs/jupyter-nb/lib/python3.6/site-packages/traitlets/config/loader.py", line 406, in load_config
dct = self._read_file_as_dict()
File "/ebio/abt3_projects/software/miniconda3/envs/jupyter-nb/lib/python3.6/site-packages/traitlets/config/loader.py", line 412, in _read_file_as_dict
return json.load(f)
File "/ebio/abt3_projects/software/miniconda3/envs/jupyter-nb/lib/python3.6/json/__init__.py", line 299, in load
parse_constant=parse_constant, object_pairs_hook=object_pairs_hook, **kw)
File "/ebio/abt3_projects/software/miniconda3/envs/jupyter-nb/lib/python3.6/json/__init__.py", line 354, in loads
return _default_decoder.decode(s)
File "/ebio/abt3_projects/software/miniconda3/envs/jupyter-nb/lib/python3.6/json/decoder.py", line 339, in decode
obj, end = self.raw_decode(s, idx=_w(s, 0).end())
File "/ebio/abt3_projects/software/miniconda3/envs/jupyter-nb/lib/python3.6/json/decoder.py", line 355, in raw_decode
obj, end = self.scan_once(s, idx)
json.decoder.JSONDecodeError: Expecting ',' delimiter: line 5 column 1 (char 59)
If the JSON file must include more than what is listed above, it would help to have that info in the README
Conda env running jupyter
# Name Version Build Channel
_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 1_gnu conda-forge
argon2-cffi 20.1.0 py36h8f6f2f9_2 conda-forge
async_generator 1.10 py_0 conda-forge
attrs 20.3.0 pyhd3deb0d_0 conda-forge
backcall 0.2.0 pyh9f0ad1d_0 conda-forge
backports 1.0 py36_1 conda-forge
backports.functools_lru_cache 1.6.1 py_0 conda-forge
bleach 3.2.1 pyh9f0ad1d_0 conda-forge
ca-certificates 2020.12.8 h06a4308_0
certifi 2020.12.5 py36h5fab9bb_1 conda-forge
cffi 1.14.4 py36hc120d54_1 conda-forge
dbus 1.13.18 hb2f20db_0
decorator 4.4.2 py_0 conda-forge
defusedxml 0.6.0 py_0 conda-forge
entrypoints 0.3 py36h9f0ad1d_1002 conda-forge
expat 2.2.10 he6710b0_2
fontconfig 2.13.1 h736d332_1003 conda-forge
freetype 2.10.4 he06d7ca_0 conda-forge
gettext 0.19.8.1 h0b5b191_1005 conda-forge
glib 2.66.4 hcd2ae1e_1 conda-forge
gst-plugins-base 1.14.5 h0935bb2_2 conda-forge
gstreamer 1.18.2 h3560a44_1 conda-forge
icu 68.1 h58526e2_0 conda-forge
importlib-metadata 3.4.0 py36h5fab9bb_0 conda-forge
importlib_metadata 3.4.0 hd8ed1ab_0 conda-forge
ipykernel 5.4.2 py36he448a4c_0 conda-forge
ipython 7.16.1 py36he448a4c_2 conda-forge
ipython_genutils 0.2.0 py36_0 conda-forge
ipywidgets 7.6.3 pyhd3deb0d_0 conda-forge
jedi 0.17.2 py36h9f0ad1d_1 conda-forge
jinja2 2.11.2 pyh9f0ad1d_0 conda-forge
jpeg 9d h516909a_0 conda-forge
jsonschema 3.2.0 py36h9f0ad1d_1 conda-forge
jupyter 1.0.0 py36_0 conda-forge
jupyter_client 6.1.11 pyhd8ed1ab_1 conda-forge
jupyter_console 6.2.0 py_0 conda-forge
jupyter_contrib_core 0.3.3 py36_1 conda-forge
jupyter_contrib_nbextensions 0.5.1 py36h9f0ad1d_1 conda-forge
jupyter_core 4.7.0 py36h5fab9bb_0 conda-forge
jupyter_highlight_selected_word 0.2.0 py36h9f0ad1d_1002 conda-forge
jupyter_latex_envs 1.4.6 py36h9f0ad1d_1001 conda-forge
jupyter_nbextensions_configurator 0.4.1 py36h9f0ad1d_2 conda-forge
jupyterlab_pygments 0.1.2 pyh9f0ad1d_0 conda-forge
jupyterlab_widgets 1.0.0 pyhd8ed1ab_1 conda-forge
krb5 1.17.2 h926e7f8_0 conda-forge
ld_impl_linux-64 2.35.1 hed1e6ac_1 conda-forge
libclang 11.0.0 default_ha5c780c_2 conda-forge
libedit 3.1.20191231 he28a2e2_2 conda-forge
libevent 2.1.10 hcdb4288_3 conda-forge
libffi 3.3 h58526e2_2 conda-forge
libgcc-ng 9.3.0 h5dbcf3e_17 conda-forge
libglib 2.66.4 h164308a_1 conda-forge
libgomp 9.3.0 h5dbcf3e_17 conda-forge
libiconv 1.16 h516909a_0 conda-forge
libllvm11 11.0.1 hf817b99_0 conda-forge
libpng 1.6.37 hed695b0_2 conda-forge
libpq 12.3 hfd2b0eb_3 conda-forge
libsodium 1.0.18 h516909a_1 conda-forge
libstdcxx-ng 9.3.0 h2ae2ef3_17 conda-forge
libuuid 2.32.1 h14c3975_1000 conda-forge
libxcb 1.14 h7b6447c_0
libxkbcommon 1.0.3 he3ba5ed_0 conda-forge
libxml2 2.9.10 h72842e0_3 conda-forge
libxslt 1.1.33 h15afd5d_2 conda-forge
lxml 4.6.2 py36h04a5ba7_1 conda-forge
lz4-c 1.9.3 h9c3ff4c_0 conda-forge
markupsafe 1.1.1 py36h8f6f2f9_3 conda-forge
mistune 0.8.4 py36h8f6f2f9_1003 conda-forge
mysql-common 8.0.22 ha770c72_1 conda-forge
mysql-libs 8.0.22 h1fd7589_1 conda-forge
nb_conda_kernels 2.3.1 py36h5fab9bb_0 conda-forge
nbclient 0.5.1 py_0 conda-forge
nbconvert 6.0.7 py36h5fab9bb_3 conda-forge
nbformat 5.0.8 py_0 conda-forge
ncurses 6.2 h58526e2_4 conda-forge
nest-asyncio 1.4.3 pyhd8ed1ab_0 conda-forge
notebook 6.1.6 py36h5fab9bb_0 conda-forge
nspr 4.29 he1b5a44_1 conda-forge
nss 3.60 hb5efdd6_0 conda-forge
openssl 1.1.1i h7f98852_0 conda-forge
packaging 20.8 pyhd3deb0d_0 conda-forge
pandoc 2.11.3.2 h7f98852_0 conda-forge
pandocfilters 1.4.3 py36h06a4308_1
parso 0.7.1 pyh9f0ad1d_0 conda-forge
pcre 8.44 he1b5a44_0 conda-forge
pexpect 4.8.0 py36h9f0ad1d_1 conda-forge
pickleshare 0.7.5 py36h9f0ad1d_1002 conda-forge
pip 20.3.3 pyhd8ed1ab_0 conda-forge
prometheus_client 0.9.0 pyhd3deb0d_0 conda-forge
prompt-toolkit 3.0.10 pyha770c72_0 conda-forge
prompt_toolkit 3.0.10 hd8ed1ab_0 conda-forge
ptyprocess 0.7.0 pyhd3deb0d_0 conda-forge
pycparser 2.20 pyh9f0ad1d_2 conda-forge
pygments 2.7.3 pyhd8ed1ab_0 conda-forge
pyparsing 2.4.7 pyh9f0ad1d_0 conda-forge
pyqt 5.12.3 py36h5fab9bb_7 conda-forge
pyqt-impl 5.12.3 py36h7ec31b9_7 conda-forge
pyqt5-sip 4.19.18 py36hc4f0c31_7 conda-forge
pyqtchart 5.12 py36h7ec31b9_7 conda-forge
pyqtwebengine 5.12.1 py36h7ec31b9_7 conda-forge
pyrsistent 0.17.3 py36h8f6f2f9_2 conda-forge
python 3.6.12 hffdb5ce_0_cpython conda-forge
python-dateutil 2.8.1 py_0 conda-forge
python_abi 3.6 1_cp36m conda-forge
pyyaml 5.3.1 py36h8f6f2f9_2 conda-forge
pyzmq 20.0.0 py36h81c33ee_1 conda-forge
qt 5.12.9 h9d6b050_2 conda-forge
qtconsole 5.0.1 pyhd8ed1ab_0 conda-forge
qtpy 1.9.0 py_0 conda-forge
readline 8.0 he28a2e2_2 conda-forge
send2trash 1.5.0 py_0 conda-forge
setuptools 51.1.2 py36h06a4308_4
six 1.15.0 pyh9f0ad1d_0 conda-forge
sqlite 3.34.0 h74cdb3f_0 conda-forge
terminado 0.9.2 py36h5fab9bb_0 conda-forge
testpath 0.4.4 py_0 conda-forge
tk 8.6.10 hed695b0_1 conda-forge
tornado 6.1 py36h8f6f2f9_1 conda-forge
traitlets 4.3.3 py36h9f0ad1d_1 conda-forge
typing_extensions 3.7.4.3 py_0 conda-forge
wcwidth 0.2.5 pyh9f0ad1d_2 conda-forge
webencodings 0.5.1 py_1 conda-forge
wheel 0.36.2 pyhd3deb0d_0 conda-forge
widgetsnbextension 3.5.1 py36h9f0ad1d_4 conda-forge
xz 5.2.5 h516909a_1 conda-forge
yaml 0.2.5 h516909a_0 conda-forge
zeromq 4.3.3 h58526e2_3 conda-forge
zipp 3.4.0 py_0 conda-forge
zlib 1.2.11 h516909a_1010 conda-forge
zstd 1.4.8 ha95c52a_1 conda-forge
fcollonval commented
Could you have a second look at your config file?
Your snippet is missing a }:
{
"CondaKernelSpecManager": {
"env_filter": "regex"
// Missing closing curly brace here
}You can check if your config file is correct JSON by running:
python -c "import json; import pathlib; print(json.loads(pathlib.Path('jupyter_config.json').read_text()))"nick-youngblut commented
Yeah, that's it. I should have paid more attention to the syntax of the example in your README.