Pinned Repositories
biojava
The git mirror of the biojava SVN
Cross-language-interfacing
Testing cross-language interfaces
Data-Predicate
A predicate system built in Perl
generic-emailer
A small perl script capable of emailing lots of people
refget-server-perl
Perl implementation of the GA4GH refget protocol
refget-server-python
An implementation of the Refget v2.0.0 standard using Python
rust-gc-count
A tool for generating wiggle files of GC from DNA written in Rust.
mysql4mirror
A container and set of scripts which allow the mirroring of our pre version 49 infrastructure, which operated only on MySQL v4
mysqlnaga
MySQL comes with a huge number of very useful scripts however there are situations where the toolset is no adequate. This package attempts to fill that gap. The project is called naga because it is meant to be red hot (like the chili). It probably will not be.
andrewyatz's Repositories
andrewyatz/refget-server-python
An implementation of the Refget v2.0.0 standard using Python
andrewyatz/rust-gc-count
A tool for generating wiggle files of GC from DNA written in Rust.
andrewyatz/generic-emailer
A small perl script capable of emailing lots of people
andrewyatz/py_generic_emailer
A batch mailer written in Python
andrewyatz/refget-server-perl
Perl implementation of the GA4GH refget protocol
andrewyatz/alphamissense
andrewyatz/api-compliance-framework
Repository containing my project for Global Alliance for Genomics and Health as part of GSoC 2019
andrewyatz/basic-htsget
Implementation of htsget using Perl and samtools to do the heavy lifting
andrewyatz/biomart-data-connect
Intership with GTI team at EMBL-EBI
andrewyatz/cellshim
A shim. You know. Shimmy?
andrewyatz/dna_book_formatter
Code for formatting DNA from FASTA and BED files
andrewyatz/ena-refget-processor
Collection of scripts and libraries used to build a mirror of ENA in object stores
andrewyatz/ensembl
The Ensembl Core Perl API and SQL schema
andrewyatz/ensembl-webcode
The code to run an Ensembl website
andrewyatz/ensembl-website-help-and-docs
documentation for the new Ensembl site
andrewyatz/ga4gh-schemablocks.github.io
Website of the GA4GH SchemaBlocks Project
andrewyatz/ga4gh-service-info
GA4GH service-info specification.
andrewyatz/gsoc2018-ref-retrieval-api
Repository for the Google Summer of Code for the Reference Retrieval API
andrewyatz/hts-specs
Specifications of SAM/BAM and related high-throughput sequencing file formats
andrewyatz/large-scale-genomics-wiki
Homepage for the Large Scale Genomics Work Stream
andrewyatz/public-plugins
Plugins for an Ensembl website
andrewyatz/refget
Python tools for refget sequence identification and retrieval
andrewyatz/refget-application-note
Code associated with the refget application note
andrewyatz/refget-compliance
Compliance reports for GA4GH refget implementations
andrewyatz/seqcol-spec
Website for DRAFT specification docs for GA4GH Sequence Collections.
andrewyatz/Test-Mock-Redis
A mock version of the Redis.pm redis client
andrewyatz/test-publishing
Figuring out how to do website publishing from a github action using a commit
andrewyatz/w3id.org
Website source code for w3id.org
andrewyatz/webdocker-perllibs
Ensembl web docker image build file
andrewyatz/withings-sync
Synchronisation of Withings weight