anuradhawick/LRBinner

Issues

• Compressed FASTQ files for read binning?

  #24 opened a month ago by yzhernand
  0

• test / example data no longer available (dead link)

  #20 opened 9 months ago by travc
  4

• Install fail - hmmer version out-of-date

  #21 opened 8 months ago by Krannich479
  1

• Could we use LRBinner after scaffolding in WGA?

  #23 opened 5 months ago by franztastic
  5

• Questions about parameter optimization for strict binning

  #22 opened 6 months ago by franciscozorrilla
  1

• Conda Environment for Dependencies

  #2 opened 3 years ago by cazzlewazzle89
  10

• Contigs binning -marker genes/hmmout problem

  #19 opened 9 months ago by Nafson194
  6

• HDBSCAN TypeError when binning contigs

  #18 opened a year ago by pabloati
  0

• Lrbinner deleted a directory?

  #17 opened a year ago by lidi4
  2

• ground truth file for eval.py?

  #11 opened a year ago by tomsauv
  8

• Error while searching for marker genes

  #10 opened a year ago by krithikaarumugam
  3

• error when counting 15-mers

  #12 opened a year ago by lewhiteside
  5

• extract bins

  #16 opened a year ago by Montmerry
  2

• question about the parameters -mbs -bc -bs --ae-dims --ae-epochs

  #8 opened a year ago by wn835166087
  3

• Errors with__init__() got an unexpected keyword argument 'cachedir'

  #14 opened a year ago by echoduan
  3

• Running LRBinner with several reads files?

  #15 opened 2 years ago by psj1997
  4

• error with separate_reads.py

  #13 opened 2 years ago by thulasis
  2

• Computing Contig Length Error

  #4 opened 3 years ago by cazzlewazzle89
  7

• running on frameshift corrected contigs

  #9 opened 2 years ago by chiaramazzoni
  1

• build failure

  #7 opened 3 years ago by wn835166087
  9

• "Clustering using HDBSCAN running" step dows not complete

  #5 opened 3 years ago by crastr
  7

• Build error: ISO C++ 2011 standard

  #6 opened 3 years ago by LynnLy
  1

• No bins from test data

  #3 opened 3 years ago by cazzlewazzle89
  2

• KeyError with cluster_utils.py

  #1 opened 3 years ago by GeoMicroSoares
  11