aria-tools/ARIA-tools

[BUG]

yaohanze opened this issue · 4 comments

Describe the bug
computeMisclosure.py has a bug in the definition of stack class.

To Reproduce
Steps to reproduce the behavior:
With current code, initialize a new stack object will raise the error stack project doesn't have attribute 'verbose'.
So I check the code of computeMisclosure.py starting from line 132.
After adding this line "self.verbose = verbose", the problem is fixed.

Thank you for pointing that out and suggesting a fix, @yaohanze. I uncovered another bug and I'm fixing that now.

Hey @rzinke can you update on status? Is this fixed as part of #298 or does more need to be done?

Issue is fixed with #298.

Issue is fixed in #306