aristoteleo/spateo-tutorials

Missing h5ad file in 3D reconstruction

Opened this issue · 2 comments

fym0503 commented

In 5_tdr/3D reconstruction.ipynb, The provided file here is missing
adata = st.sample_data.drosophila(filename="E7-9h_cellbin.h5ad")
Traceback (most recent call last):
File "/mnt/data/aim/fanyimin/projects/spateo-tutorials/5_tdr/3D Reconstruction.py", line 33, in
adata = st.sample_data.drosophila(filename="E7-9h_cellbin.h5ad")
File "/mnt/data/aim/fanyimin/projects/spateo-release/spateo/sample_data.py", line 118, in drosophila
adata = get_adata(url=url_dict[filename], filename=filename, dir_name=dir_name)
KeyError: 'E7-9h_cellbin.h5ad'

matthieuheitz commented

I would also be interested in having this file.
Where can we access the timepoints collected in Spateo's publication?
Wang et al. provide E14-16 and E16-18, where can we access E7-9 and E9-10?
Thank you!

matthieuheitz commented

Oh I just saw this: aristoteleo/spateo-release#201 (comment)
Let us know when the paper is published then.
Thanks.