arronsullivan

arronsullivan's Stars

• a-r-j/graphein

  Protein Graph Library

  Language:Jupyter Notebook1k130

• BIOP/ijp-operetta-importer

  PerkinElmer Operetta Importer using BioFormats!

  Language:HTML93

• aqlaboratory/openfold

  Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

  Language:Python2.8k542

• BradyAJohnston/MolecularNodes

  Toolbox for molecular animations in Blender, powered by Geometry Nodes.

  Language:Python90985

• stackbuffer/ads

  store data in soundwaves

  Language:Jupyter Notebook809

• mito-ds/mito

  The mitosheet package, trymito.io, and other public Mito code.

  Language:Jupyter Notebook2.3k158

• fractal-napari-plugins-collection/napari-feature-classifier

  Language:Jupyter Notebook215

• rasbt/machine-learning-notes

  Collection of useful machine learning codes and snippets (originally intended for my personal use)

  Language:Jupyter Notebook784140

• TomAugspurger/effective-pandas

  Source code for my collection of articles on using pandas.

  Language:Jupyter Notebook1.5k383

• rougier/scientific-visualization-book

  An open access book on scientific visualization using python and matplotlib

  Language:Python10.7k992

• ultralytics/yolov5

  YOLOv5 🚀 in PyTorch > ONNX > CoreML > TFLite

  Language:Python50.8k16.3k

• Cartucho/OpenLabeling

  Label images and video for Computer Vision applications

  Language:Python931265

• sofroniewn/tutorial-scipy2021-bioimage-analysis-fundamentals

  Tutorial for SciPy 2021 Bioimage Analysis Fundamentals in Python

  Language:Jupyter Notebook308

• CSBDeep/CSBDeep

  Image restoration for fluorescence microscopy

  Language:Python28482

• vgsatorras/egnn

  Language:Python42576

• broadinstitute/imaging-platform-pipelines

  Cell Painting and other pipelines from the Imaging Platform

  1413

• shreyashankar/create-ml-app

  Template Makefile for ML projects in Python.

  Language:Python52146

• plotly/dash-sample-apps

  Open-source demos hosted on Dash Gallery

  Language:Jupyter Notebook3.2k3k

• cytomining/cytominer

  Methods for Image-Based Cell Profiling

  Language:R4928

• AllenInstitute/aics-segmentation

  AICS Segmentation (One-Way) Mirror

  Language:Jupyter Notebook457

• AllenInstitute/aics-ml-segmentation

  AICS ML Segmentation (One-Way) Mirror

  Language:Python266

• CellProfiler/CellProfiler-plugins

  Community-contributed and experimental CellProfiler modules.

  Language:Python5867

• spreka/biomagdsb

  This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 2018 competition

  Language:MATLAB5215

• CellProfiler/CellProfiler

  An open-source application for biological image analysis

  Language:Python918376

• matbesancon/lightgraphs_workshop

  Language:Jupyter Notebook4712

• dpsanders/LearnJulia2020

  Language:Jupyter Notebook10241

• sofroniewn/napari-training-course

  Lectures for a napari training course

  Language:Jupyter Notebook5021

• guiwitz/napari_demo

  Language:Jupyter Notebook214

• guiwitz/naparimovie

  Create movies from series of key-frames in napari.

  Language:Python385

• guiwitz/neubias_academy_biapy

  NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter

  Language:Jupyter Notebook6236