Platforms out of date in wiki
Opened this issue · 1 comments
burgerga commented
See https://github.com/auerbachs/BMDExpress-2/wiki/Additional-Information#supported-microarrays
Current list should be:
| ID | Name | Provider | Species |
|---|---|---|---|
| GPL1319 | Zebrafish Genome Array | Affymetrix | Danio rerio |
| GPL1322 | Drosophila Genome 2.0 Array | Affymetrix | Drosophila melanogaster |
| GPL72 | Drosophila Genome Array | Affymetrix | Drosophila melanogaster |
| GPL13158 | HT HG-U133+ PM Array Plate | Affymetrix | Homo sapiens |
| GPL201 | Human HG-Focus Target Array | Affymetrix | Homo sapiens |
| GPL570 | Human Genome U133 Plus 2.0 Array | Affymetrix | Homo sapiens |
| GPL571 | Human Genome U133A 2.0 Array | Affymetrix | Homo sapiens |
| GPL96 | Human Genome U133A Array | Affymetrix | Homo sapiens |
| GPL11180 | HT MG-430 PM Array Plate | Affymetrix | Mus musculus |
| GPL1261 | Mouse Genome 430 2.0 Array | Affymetrix | Mus musculus |
| GPL32 | Murine Genome U74A Array | Affymetrix | Mus musculus |
| GPL339 | Mouse Expression 430A Array | Affymetrix | Mus musculus |
| GPL340 | Mouse Expression 430B Array | Affymetrix | Mus musculus |
| GPL81 | Murine Genome U74A Version 2 Array | Affymetrix | Mus musculus |
| GPL8321 | Mouse Genome 430A 2.0 Array | Affymetrix | Mus musculus |
| GPL1355 | Rat Genome 230 2.0 Array | Affymetrix | Rattus norvegicus |
| GPL16985 | HT RG-230 PM Array Plate | Affymetrix | Rattus norvegicus |
| GPL341 | Rat Expression 230A Array | Affymetrix | Rattus norvegicus |
| GPL342 | Rat Expression 230B Array | Affymetrix | Rattus norvegicus |
| GPL85 | Rat Genome U34 Array | Affymetrix | Rattus norvegicus |
| GPL14664 | 026437 D. rerio (Zebrafish) Oligo Microarray V3 | Agilent | Danio rerio |
| GPL7300 | 018972 D. melanogaster (FruitFly) Oligo Microarray 4x44K G2519F | Agilent | Drosophila melanogaster |
| GPL6480 | 014850 Whole Human Genome Microarray 4x44K G4112F | Agilent | Homo sapiens |
| GPL11202 | 026655 Whole Mouse Genome Microarray 4x44K v2_GPL11202 | Agilent | Mus musculus |
| GPL21163 | 074809 SurePrint G3 Mouse GE v2 8x60K Microarray | Agilent | Mus musculus |
| GPL7202 | 014868 Whole Mouse Genome Microarray 4x44K G4122F | Agilent | Mus musculus |
| GPL14746 | Agilent-028282 Whole Rat Genome Microarray 4x44K v3 | Agilent | Rattus norvegicus |
| GPL22145 | 074036 SurePrint G3 Rat GE v2 8x60K Microarray | Agilent | Rattus norvegicus |
| GPL7294 | 014879 Whole Rat Genome Microarray 4x44K G4131F | Agilent | Rattus norvegicus |
| EUToxRisk_Human | EU_ToxRisk_Human | BioSpyder | Homo sapiens |
| S1500_Plus_Human | S1500_Human | BioSpyder | Homo sapiens |
| S1500_Plus_Plus_Human | S1500_Plus_Plus_Human_2.0 191113 | BioSpyder | Homo sapiens |
| WT_Human | WT_Human | BioSpyder | Homo sapiens |
| S1500_Plus_Mouse | S1500_Mouse | BioSpyder | Mus musculus |
| WT_Mouse | WT_Mouse | BioSpyder | Mus musculus |
| S1500_Plus_Rat | S1500_Rat | BioSpyder | Rattus norvegicus |
| WT_Rat | WT_Rat | BioSpyder | Rattus norvegicus |
| danRer11_Ensembl | danRer11_Ensembl | Ensembl | Danio rerio |
| dm6_Ensembl | dm6_Ensembl | Ensembl | Drosophila melanogaster |
| hg38_Ensembl | hg38_Ensembl | Ensembl | Homo sapiens |
| mm10_Ensembl | mm10_Ensembl | Ensembl | Mus musculus |
| rn6_Ensembl | rn6_Ensembl | Ensembl | Rattus norvegicus |
| Human_Genie | Human_Genie | Genie | Homo sapiens |
| Mouse_Genie | Mouse_Genie | Genie | Mus musculus |
| Rat_Genie | Rat_Genie | Genie | Rattus norvegicus |
| GPL10558 | HumanHT-12 V4.0 expression beadchip | Illumina | Homo sapiens |
| GPL6885 | MouseRef-8 v2.0 expression beadchip | Illumina | Mus musculus |
| GPL6887 | MouseWG-6 v2.0 expression beadchip | Illumina | Mus musculus |
| GPL6101 | ratRef-12 v1.0 expression beadchip | Illumina | Rattus norvegicus |
| danRer10_RefSeq | danRer10_RefSeq | RefSeq | Danio rerio |
| danRer11_RefSeq | danRer11_RefSeq | RefSeq | Danio rerio |
| dm3_RefSeq | dm3_RefSeq | RefSeq | Drosophila melanogaster |
| dm6_RefSeq | dm6_RefSeq | RefSeq | Drosophila melanogaster |
| hg19_RefSeq | hg19_RefSeq | RefSeq | Homo sapiens |
| hg38_RefSeq | hg38_RefSeq | RefSeq | Homo sapiens |
| mm10_RefSeq | mm10_RefSeq | RefSeq | Mus musculus |
| mm9_RefSeq | mm9_RefSeq | RefSeq | Mus musculus |
| rn5_RefSeq | rn5_RefSeq | RefSeq | Rattus norvegicus |
| rn6_RefSeq | rn6_RefSeq | RefSeq | Rattus norvegicus |
Here as md file for your convenience:
bmdx_platforms.md
JoryC commented
As far as I can tell from the BMDExpress3 wiki section 'Supported Gene Expression Platforms', this still has not been updated. Thank you for opening this issue and providing the .md file @burgerga :)