authy/authy-ssh

Issue with trying to use ' ssh-copy-id ' to send public keys to an ssh server using authy-ssh

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Whenever I try and add new public keys using ssh-copy-idfor new remote clients to a server that uses authy-ssh, it will give me three immediately failed attempts to enter the authy generated token into the terminal, without giving me the possibility to check authy for a code and entering it. Is there a better way to send keys to an authy-hardened ssh server, do I need to disable authy temporarily, or are there some other options I should be using I'm not aware of?