Pinned Repositories
-2014-03-31-jre
carpentry
2014-03-31-jre
carpentry
Applied_Bioinformatics_2021
Repository for code generated during the group project for the course Applied Bioinformatics at Uppsala University, autumn 2021.
Applied_Bioinformatics_Group_4
Automatic-Pipeline-for-Analysing-NGS-data-using-MOSAIK-and-custom-tools
HTS-de-novo-transcript-pipeline
A pipeline for taking HTS sequence data from RNA seq and generating RNA transcripts
HTStools
A mix of different tools created to handle down stream analysis
RNAannotation
Scripts to properly annotate RNA
RNAmappingPipeline
SPARC
b97jre's Repositories
b97jre/SPARC
b97jre/RNAannotation
Scripts to properly annotate RNA
b97jre/HTStools
A mix of different tools created to handle down stream analysis
b97jre/RNAmappingPipeline
b97jre/Applied_Bioinformatics_2021
Repository for code generated during the group project for the course Applied Bioinformatics at Uppsala University, autumn 2021.
b97jre/Applied_Bioinformatics_Group_4
b97jre/RNAseqcourse
Code that is needed to generate the RNA seq course
b97jre/ClusterAnalysisTools
b97jre/course_rnaseq
Course material | Workshop on RNA-Seq
b97jre/covid19
Analysis of Covid19
b97jre/cyclone
cyclone
b97jre/deNovoValidation
Validating deNova assembled transcripts for chimeric transcripts
b97jre/DESeq2
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DESeq2.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=DESeq2.
b97jre/dMelanogaster_UCSCtracks
b97jre/Ing-Simmons_et_al_dorsoventral_3D_genome
b97jre/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
b97jre/NeurosporaMethylation
Project to analyse methylation pattern in Neurospora
b97jre/ngsintro-rnaseq
RNA-Seq course | Introduction to Bioinformatics using NGS data
b97jre/RNAdeNovoExtension
b97jre/RNAseqCourseScilife
Course homepages for some of the courses given at SciLifeLab
b97jre/SBATCH
Uppmax specific sbatch scripts for different bioniformatic programs
b97jre/SCENICprotocol
A scalable SCENIC workflow for single-cell gene regulatory network analysis
b97jre/scp_course
b97jre/scrna-cell-cycle
scrna-cell-cycle
b97jre/seurat
R toolkit for single cell genomics
b97jre/SIMLR
Single-cell Interpretation via Multi-kernel Learning (R code in master branch, Matlab code in matlab branch)
b97jre/single-cell_sib_scilifelab
SIB/Scilifelab autumn school in single cell omics 2019.
b97jre/velocyto.py
RNA velocity estimation in Python
b97jre/velocyto.R
RNA velocity estimation in R
b97jre/workshop-RNAseq
Workshop • Analysis of RNA-seq data