bacpop/ska.rust

Issues

• minor suggestions about "ska delete"

  #79 opened 4 months ago by rderelle
  2

• Possible faster bloom filter

  #78 opened 4 months ago by johnlees
  1

• nanopore data

  #67 opened 4 months ago by PWSmit
  3

• different results from ska2 0.3.2 and 0.3.6

  #69 opened 4 months ago by danrlu
  3

• to merge ska cov with ska build for automatic min-count threshold [suggestion]

  #77 opened 4 months ago by rderelle
  0

• Possible changes to fastq input

  #52 opened a year ago by johnlees
  8

• How do I cite this package?

  #68 opened 8 months ago by danrlu
  4

• Suggestion: ska map to only report positions of variable split-kmers

  #65 opened 10 months ago by rderelle
  7

• Suggestion: consistent output suffixes in ska weed

  #64 opened 10 months ago by rderelle
  1

• Do you have an estimated RAM usage per sample?

  #23 opened 2 years ago by danrlu
  3

• Defaults and filtering tweaks

  #62 opened a year ago by johnlees
  0

• Add tutorial with use cases

  #18 opened a year ago by johnlees
  1

• strange behaviour for min-count (ska build)

  #56 opened a year ago by rderelle
  9

• Feature request: filter out missing bases in ska align

  #51 opened a year ago by rderelle
  3

• request: Iterator trait for MergeSkaArray

  #54 opened a year ago by rderelle
  1

• Change middle base default filter to strict

  #53 opened a year ago by johnlees
  0

• `ska map` fails with some fragmented reference sequences

  #59 opened a year ago by tmaklin
  3

• ska merge and delete not working

  #57 opened a year ago by rderelle
  6

• Add kmer count per sample to ska nk output

  #39 opened a year ago by danrlu
  7

• Alternatives for .skf format

  #47 opened a year ago by johnlees
  4

• Feature requests: different mixture model; combined ska build & cov

  #50 opened a year ago by rderelle
  2

• 'Palindrome middle base not W/S: 78' in ska build

  #48 opened a year ago by jvfe
  6

• Alternatives for .skf format

  #17 opened a year ago by johnlees
  6

• Partial loading of skf

  #22 opened a year ago by johnlees
  2

• Add ambiguous genotypes in VCF output

  #5 opened 2 years ago by johnlees
  1

• Degraded performance of k-mer filter from FASTQ files

  #45 opened a year ago by johnlees
  14

• Non-nucleotide bases produced within ska map alignment

  #41 opened a year ago by jdaeth274
  6

• Add filter to ska map, and ambiguous filter to ska weed

  #42 opened a year ago by johnlees
  1

• Documentation improvements

  #43 opened a year ago by johnlees
  0

• The distance result is very different from the old version

  #38 opened a year ago by danrlu
  6

• Add option for repeat mapping

  #32 opened a year ago by johnlees
  0

• add back ska distance and ska annotate?

  #25 opened a year ago by cammo0p
  5

• Add ska distance

  #26 opened a year ago by johnlees
  2

• Add automatic coverage determination

  #29 opened 2 years ago by johnlees
  0

• Reference bias in map with repeats

  #28 opened 2 years ago by johnlees
  0

• Consider palindromic self-rc k-mers

  #27 opened 2 years ago by johnlees
  0

• Support k up to 63

  #4 opened 2 years ago by johnlees
  1