Pinned Repositories
baudrly.github.io
bioconda-recipes
Conda recipes for the bioconda channel.
Boost-HiC
clop
ectocarpus_scripts
Scripts and materials needed to reproduce results and figures in the instaGRAAL showcase paper
hicstuff
Stuff to do with HiC data
chromosight
Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps
instaGRAAL
Large genome reassembly based on Hi-C data, continuation of GRAAL
metaTOR
Metagenomic binning based on Hi-C data
serpentine
Local, normalization-free contact map binning
baudrly's Repositories
baudrly/hicstuff
Stuff to do with HiC data
baudrly/baudrly.github.io
baudrly/bioconda-recipes
Conda recipes for the bioconda channel.
baudrly/Boost-HiC
baudrly/clop
baudrly/ectocarpus_scripts
Scripts and materials needed to reproduce results and figures in the instaGRAAL showcase paper
baudrly/GRAAL
Software from Marie-Nelly et al., 2014 (High-quality genome assembly using chromosomal contact data)
baudrly/HiC-Box
baudrly/instaGRAAL
Large genome reassembly based on Hi-C data. Continuation of GRAAL Software from Marie-Nelly et al., Nature Communications, 2014 (High-quality genome assembly using chromosomal contact data), and Marie-Nelly 2013, PhD thesis (https://www.theses.fr/2013PA066714)
baudrly/Louvain-BinaryBuild
A project to host binary artifacts for Louvain Community Detection Algorithm
baudrly/metaTOR
Metagenomic binning based on Hi-C data
baudrly/serpentine
The so-called serpentine binning
baudrly/yahcp
Yet Another Hi-C Pipeline