bauerdavid/napari-nD-annotator

'autofill objects' mode ignores 'preserve labels'

Closed this issue · 1 comments

niederle commented

Describe the bug
I have 'autofill objects' activated as well as 'preserve labels' from the labeling GUI. If I draw next to an existing label, the label is preserved while drawing but the fill mode sometimes ignores it so that some already labeled pixels get relabeled.

To Reproduce
Steps to reproduce the behavior:

  • 'autofill objects' activated
  • 'preserve labels' activated
  • draw one labels (convex/concave shapes make the issue more obvious)
  • draw another label next to it

Expected behavior
I would expect the existing label remains untouched.

napari info

napari: 0.4.15
Platform: macOS-10.13.6-x86_64-i386-64bit
System: MacOS 10.13.6
Python: 3.9.7 (default, Sep 16 2021, 08:50:36) [Clang 10.0.0 ]
Qt: 5.15.2
PyQt5: 5.15.6
NumPy: 1.21.5
SciPy: 1.8.0
Dask: 2022.02.0
VisPy: 0.9.6

OpenGL:
- GL version: 2.1 INTEL-10.36.32
- MAX_TEXTURE_SIZE: 16384

Screens:
- screen 1: resolution 2560x1440, scale 1.0
- screen 2: resolution 1440x900, scale 2.0

Plugins:
- PlatyMatch: 0.0.3
- RedLionfish: 0.6
- animation: 0.0.2
- cellpose-napari: 0.1.4
- clEsperanto: 0.15.4
- console: 0.0.4
- devbio_napari: 0.4.0
- napari-3d-ortho-viewer: 0.0.1
- napari-accelerated-pixel-and-object-classification: 0.6.6
- napari-brightness-contrast: 0.1.6
- napari-clusters-plotter: 0.2.2
- napari-crop: 0.1.5
- napari-curtain: 0.1.1
- napari-folder-browser: 0.1.3
- napari-itk-io: 0.1.0
- napari-ome-zarr: 0.3.2
- napari-plot-profile: 0.2.1
- napari-plugin-search: 0.1.3
- napari-segment-blobs-and-things-with-membranes: 0.2.17
- napari-simpleitk-image-processing: 0.2.1
- napari-tabu: 0.1.5
- napari-time-slicer: 0.4.3
- napari-tools-menu: 0.1.10
- napari-workflow-optimizer: 0.1.3
- napari_skimage_regionprops1: 0.2.9
- napari_skimage_regionprops2: 0.2.9
- scikit-image: 0.4.15
- svg: 0.1.6
bauerdavid commented

problem resolved in 2b36d04 (luckily an easy fix). However, I will create a new release only later. If you want to try the new version, you can directly install it from the repository:
pip install git+https://github.com/bauerdavid/napari-nD-annotator.git@main

  • 👍1