Error when installing on Win10
Closed this issue · 4 comments
This is the version info
platform x86_64-w64-mingw32
arch x86_64
os mingw32
system x86_64, mingw32
status
major 3
minor 5.0
year 2018
month 04
day 23
svn rev 74626
language R
version.string R version 3.5.0 (2018-04-23)
nickname Joy in Playing
The packages stringr and rJava were installed normally but an error (see below) occurred when installing r-causal.
> install_github("bd2kccd/r-causal")
Downloading GitHub repo bd2kccd/r-causal@master
√ checking for file 'C:\Users\Shoubo\AppData\Local\Temp\RtmpSCTm95\remotes3d7866da46f3\bd2kccd-r-causal-8d2b178/DESCRIPTION' ...
- preparing 'rcausal': (7.2s)
√ checking DESCRIPTION meta-information ...
- checking whether 'INDEX' is up-to-date ... NO
- use '--force' to remove the existing 'INDEX'
- checking for LF line-endings in source and make files and shell scripts
- checking for empty or unneeded directories
- looking to see if a 'data/datalist' file should be added
- building 'rcausal_1.1.1.tar.gz'
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'rcausal/java/edu/cmu/tetrad/algcomparison/algorithm/mixed/pattern/MixedFgesDiscretingContinuousVariables.java'
Warning in utils::tar(filepath, pkgname, compression = "gzip", compression_level = 9L, :
storing paths of more than 100 bytes is not portable:
'rcausal/java/edu/cmu/tetrad/algcomparison/algorithm/mixed/pattern/MixedFgesTreatingDiscreteAsContinuous.java'
Installing package into ‘C:/Users/Shoubo/Documents/R/win-library/3.5’
(as ‘lib’ is unspecified)
* installing *source* package 'rcausal' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'rcausal'
finding HTML links ... done
audiology html
bayesEst html
ccd html
charity html
randomDag html
rcausal html
tetradrunner html
** building package indices
** installing vignettes
** testing if installed package can be loaded
*** arch - i386
Error: package or namespace load failed for 'rcausal':
.onLoad failed in loadNamespace() for 'rJava', details:
call: fun(libname, pkgname)
error: No CurrentVersion entry in Software/JavaSoft registry! Try re-installing Java and make sure R and Java have matching architectures.
Error: loading failed
Execution halted
*** arch - x64
ERROR: loading failed for 'i386'
* removing 'C:/Users/Shoubo/Documents/R/win-library/3.5/rcausal'
In R CMD INSTALL
Error: Failed to install 'rcausal' from GitHub:
(converted from warning) installation of package ‘C:/Users/Shoubo/AppData/Local/Temp/RtmpSCTm95/file3d786e1d6783/rcausal_1.1.1.tar.gz’ had non-zero exit status
I was wondering where I went wrong that caused this issue? Thanks!
It should be some wrong with your Java setting and installation. Did you install JDK or JRE? It needs JDK 8 either from Oracle or openJDK. However, have you try running r-causal on Docker? https://hub.docker.com/r/chirayukong/r-causal-rstudio/
The JRE should be correctly installed since pycausal could work normally.
I have no idea what Docker is but will give it a try. Much appreciated!
For others ran into the same issue, I solve it following this link.
Basically, both 32 and 64bit JDK should be installed if you are using 64bit R.
Thanks for the link. I'll put it on the README.