berntpopp/variant-linker

Feature request: Handle "chr" Prefix in VCF Notation

Closed this issue · 0 comments

berntpopp commented

Description

Currently, the tool does not correctly process VCF notations that include the "chr" prefix in the chromosome part of the VCF string. This enhancement will allow the tool to handle such cases gracefully.

Acceptance Criteria

  • Modify the convertVcfToEnsemblFormat function to correctly handle VCF strings with "chr" prefix.
  • Add tests to verify the functionality with VCF strings both with and without "chr" prefix.