[Feature Request]: Support ΔΔG/RT format
alexlenail opened this issue · 1 comments
MatrixREDUCE outputs energy profiles. Would be cool to see seqlogo support plotting them:
Apparently I wasn't receiving email notifications for new issues on this repo. I have no idea why, but nevertheless.
I am not familiar with the MatrixREDUCE format, but a majority of the formatting is governed by WebLogo and not seqlogo. seqlogo is just a Python wrapper for WebLogo. Additionally, seqlogo was written for classroom demonstrations and introductions to sequence motiffs, so a ton of functionality is pared down.
That said, if you would like to pursue this feature request, if you can provide me an example of a MatrixREDUCE PWM, I am happy to try when bandwidth is available. Since I see that this feature request is over 2 years old, I assume you may have moved on. For the sake of posterity and since you have a strong background in JS, there is a library called LogoJS that does support MatrixREDUCE format. If you would like to stay in Python, LogoMaker is another very robust package that has a lot more functionality and no dependence on WebLogo.