bids-apps/DPARSF

The subject ID sub-01 in TRInfo.tsv doesn't match the target sbuject ID: sub-02!

chrisgorgo opened this issue · 2 comments

$ docker run -ti --rm --read-only -v /tmp:/tmp -v /var/tmp:/var/tmp -v ${HOME}/data/ds114_test2:/bids_dataset -v ${HOME}/outputs2:/outputs bids/${CIRCLE_PROJECT_REPONAME,,} /bids_dataset /outputs participant --participant_label 02
Converting BIDS to DPARSFA structure...

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Setting up environment variables

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LD_LIBRARY_PATH is .:/opt/mcr/v91/runtime/glnxa64:/opt/mcr/v91/bin/glnxa64:/opt/mcr/v91/sys/os/glnxa64:/opt/mcr/v91/sys/opengl/lib/glnxa64

Warning: File: /opt/DPARSFA_run_StandAlone_Linux/DPARSFA_run_mcr/home/yanlab/Soft/DPABI/DPABIV2.3StandAlone/DPARSFA_run_SeparateDir/DPARSFA_run.m Line: 712 Column: 66

The temporary variable SliceOrder will be cleared at the beginning of each iteration of the parfor loop.

Any value assigned to it before the loop will be lost.  If SliceOrder is used before it is assigned in the parfor loop, a runtime error will occur.

See Parallel for Loops in MATLAB, "Temporary Variables".

Warning: File: /opt/DPARSFA_run_StandAlone_Linux/DPARSFA_run_mcr/home/yanlab/Soft/DPABI/DPABIV2.3StandAlone/DPARSFA_run_SeparateDir/DPARSFA_run.m Line: 967 Column: 83

The temporary variable RefFile will be cleared at the beginning of each iteration of the parfor loop.

Any value assigned to it before the loop will be lost.  If RefFile is used before it is assigned in the parfor loop, a runtime error will occur.

See Parallel for Loops in MATLAB, "Temporary Variables".

Warning: File: /opt/DPARSFA_run_StandAlone_Linux/DPARSFA_run_mcr/home/yanlab/Soft/DPABI/DPABIV2.3StandAlone/DPARSFA_run_SeparateDir/DPARSFA_run.m Line: 2715 Column: 24

The temporary variable DirImg will be cleared at the beginning of each iteration of the parfor loop.

Any value assigned to it before the loop will be lost.  If DirImg is used before it is assigned in the parfor loop, a runtime error will occur.

See Parallel for Loops in MATLAB, "Temporary Variables".

Warning: File: /opt/DPARSFA_run_StandAlone_Linux/DPARSFA_run_mcr/home/yanlab/Soft/DPABI/DPABIV2.3StandAlone/DPARSFA_run_SeparateDir/DPARSFA_run.m Line: 4423 Column: 32

The temporary variable DirImg will be cleared at the beginning of each iteration of the parfor loop.

Any value assigned to it before the loop will be lost.  If DirImg is used before it is assigned in the parfor loop, a runtime error will occur.

See Parallel for Loops in MATLAB, "Temporary Variables".

�Error using DPARSFA_run (line 477)

The subject ID sub-01 in TRInfo.tsv doesn't match the target sbuject ID: sub-02!

It does, however, work with --participant_label 01.
https://circleci.com/gh/chrisfilo/DPARSF/2#artifacts/containers/0

See how it works now.

try again