More parameters for MSstats
ypriverol opened this issue · 0 comments
ypriverol commented
Description of the bug
For MSstats would be good to have more parametrization:
- MSstats has multiple performance issues that can be tackle using parameters.
- TMT plots for QC and ProfilePlot. When using in the parameters the option
allonly
the plots are summary, if the parameter has the optionall
, then it prints the plot for every protein which is memory consuming, see error #282Line 817 in a860ade
- In the TMT and LFQ when too many proteins or peptides are reported, it doesn't matter how much memory is allocated the MSstats analysis fail. Some parameters that can improve performance on MSstats are: https://groups.google.com/g/msstats/c/bjbzYRqmldc
- TMT plots for QC and ProfilePlot. When using in the parameters the option
Command used and terminal output
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Relevant files
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System information
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