Deal with redundancy of Galaxy datatypes when Input/Output from Bio.tools are described with more than one EDAM format
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khillion commented
For instance, one output of BMGE/1.12 (https://bio.tools/tool/BMGE/version/1.12) is described by 3 EDAM formats:
"output": [
{
"data": {
"uri": "http://edamontology.org/data_0863",
"term": "Sequence alignment"
},
"format": [
{
"uri": "http://edamontology.org/format_1973",
"term": "nexusnon"
},
{
"uri": "http://edamontology.org/format_1998",
"term": "phylipnon"
},
{
"uri": "http://edamontology.org/format_1984",
"term": "FASTA-aln"
}
]
}
Processed by ToolDog, the description generated for Galaxy contains two time the datatype data
:
<data format="data, data, txt" from_work_dir="OUTPUT1.ext" hidden="false" name="OUTPUT1"/>
and instead should be
<data format="data, txt" from_work_dir="OUTPUT1.ext" hidden="false" name="OUTPUT1"/>