biocommons/hgvs
Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
PythonApache-2.0
Issues
- 2
import.im6: unable to grab mouse
#579 opened - 1
how to use locally
#578 opened - 3
how can I use hgvs locally and parallel?
#577 opened - 2
Can hgvs left shift/align/shuffle variants?
#574 opened - 1
- 0
- 3
how to deal with Other NCBI genome versions
#569 opened - 1
- 8
- 4
- 2
- 1
Fail to parse long variant
#564 opened - 1
getting chromosome name
#563 opened - 1
- 2
- 2
Code cleanup for 2.0 release
#559 opened - 1
- 1
Configure line length in python analysis
#556 opened - 8
- 2
Drop support for Python 2.7
#552 opened - 0
Streamline testing
#551 opened - 1
[Trivial] Add syntax highlighting to README
#549 opened - 1
- 3
- 0
- 4
- 1
make tests to run through jupyter notebooks
#542 opened - 0
bug in examples/creating-a-variant.ipynb
#541 opened - 3
- 6
- 4
- 10
- 1
- 1
- 0
Initial Update
#534 opened - 3
'str()' fails with 'HGVSUnsupportedOperationError' for variants containing an uncertain position
#532 opened - 6
seqrepo :maintain a local sequence database
#531 opened - 1
UTA access through a proxy
#530 opened - 9
- 0
- 3
- 1
g_to_c fails for Repeat variant
#524 opened - 1
- 6
- 3
Adding support for Refseq record versions
#521 opened - 3
SeqRepo files left open after hdp.close()?
#520 opened - 4
- 6
Provide utility to generate transcript variants from HGVS-ish expressions with gene names
#517 opened - 0
Move dependencies to setup.py
#515 opened - 8