biolink/biolink-model

Issues

• additional aspect qualifiers

  #1415 opened 4 months ago by vdancik
  2

• Missing enum for approval status

  #1452 opened 4 months ago by vdancik
  3

• Add GeneticCode as an attribute, and a has_genetic_code predicate

  #1517 opened 5 months ago by cmungall
  0

• prefixes in use not in biolink prefixmap

  #1516 opened 5 months ago by sierra-moxon
  0

• add max research phase enum values

  #1515 opened 5 months ago by sierra-moxon
  0

• Add info to association qualifiers describing which part of the statement they apply to

  #1514 opened 5 months ago by Woozl
  2

• Is the domain of 'predisposes to condition' (chemical or drug or treatment) too restrictive?

  #1511 opened 6 months ago by bill-baumgartner
  0

• `biolink` base namespace does not redirect correctly?

  #1484 opened 8 months ago by matentzn
  1

• It seems impossible to instantiate GeneToGoTermAssociation objects using the python classes

  #1507 opened 6 months ago by KeithKelleher
  0

• Some confusion about the URL to be used for NCBIGene in the prefix map

  #1431 opened 6 months ago by gaurav
  3

• What is the Prefix for microRNA?

  #1503 opened 6 months ago by codewarrior2000
  0

• Add a public visibility tag to mixins

  #1411 opened a year ago by RichardBruskiewich
  2

• Sequence Motif PWMs

  #1499 opened 7 months ago by riyavsinha
  0

• Pathway `preceded_by`/`followed_by`

  #1498 opened 7 months ago by riyavsinha
  2

• representing active metabolites

  #1414 opened a year ago by vdancik
  2

• Generated Python/Pydantic Models as Package?

  #1496 opened 7 months ago by riyavsinha
  1

• Prediction Qualifiers

  #1494 opened 7 months ago by riyavsinha
  2

• https://biolink.github.io/ returns 404

  #1430 opened a year ago by nlharris
  0

• biolink prefix in biolink-model.yaml returns 404

  #1453 opened 9 months ago by puja-trivedi
  0

• Move prefix map to src

  #1493 opened 7 months ago by gaurav
  0

• A URL from Reactome database

  #1486 opened 8 months ago by codewarrior2000
  11

• Undeprecate RWE predicate

  #1390 opened 8 months ago by karafecho
  0

• New predicate request for micro-organisms <=> media

  #1401 opened a year ago by hrshdhgd
  4

• Obsolete Bacterium, or place it correctly

  #1482 opened 8 months ago by cmungall
  0

• Make the hierarchy is-a complete

  #1483 opened 8 months ago by cmungall
  0

• Inverses of mixin predicates don't establish an is_a path to a "root" mixin

  #1480 opened 8 months ago by sierra-moxon
  0

• Two discrepencies in `OMIM` prefix

  #1485 opened 8 months ago by gaurav
  0

• Duplicate `id_prefixes` for all ChemicalEntities, including all possible chemical namespaces on each class

  #1386 opened 8 months ago by sierra-moxon
  5

• Create a class representing Information Resources

  #1447 opened 8 months ago by mbrush
  1

• Reduce the priority on UMLS as an id_prefix for biolink:ChemicalEntity

  #1448 opened 8 months ago by gaurav
  1

• SEMMED mappings to related to

  #1457 opened 8 months ago by cbizon
  0

• Incorrect mapping? skos:relatedMatch

  #1456 opened 8 months ago by cbizon
  1

• Hazardous or Poisonous Substance (T131) mapped incorrectly to SmallMolecule

  #1454 opened 8 months ago by gaurav
  0

• Importing biolink raises ModuleNotFoundError

  #1466 opened 8 months ago by caufieldjh
  1

• FMA identifiers don't resolve

  #1458 opened 9 months ago by cbizon
  1

• Add a biolink:CommonDataElementBundle to provide an ordered list of biolink:CommonDataElement

  #1455 opened 9 months ago by gaurav
  0

• fIx definition of support_graphs association slot

  #1442 opened 10 months ago by mbrush
  0

• Reconfigure OWL export

  #1432 opened a year ago by cmungall
  0

• NCIT prefix should be defined in the biolink-model.yaml `prefixes` section

  #1425 opened a year ago by gaurav
  3

• Add biolink model purl to top level README

  #1410 opened a year ago by kevinschaper
  3

• Biolink Model "Cookbook" or ...

  #1412 opened a year ago by RichardBruskiewich
  1

• BioLink documentation website style broken for some months now (missing the sidebar that was critical for navigation)

  #1393 opened a year ago by vemonet
  4

• schema fails linkml validation

  #1420 opened a year ago by glass-ships
  2

• Promote GenomicEntity to be a concrete class instead of a mixin

  #1405 opened a year ago by gaurav
  5

• Should `OrganismTaxon` be a child of `OrganismalEntity` ?

  #1419 opened a year ago by hrshdhgd
  2

• Improve formulation of PMC in prefix map

  #1417 opened a year ago by cthoyt
  1

• representing strains/variants

  #1413 opened a year ago by vdancik
  0

• representing components that can be present in complex mixture

  #1416 opened a year ago by vdancik
  0

• Updating infores catalog guidelines?

  #1392 opened a year ago by colleenXu
  0

• GeneAffectsChemicalAssociation with qualifiers

  #1387 opened a year ago by RichardBruskiewich
  1