bioone

bioone's Stars

• kwongj/maskrc-svg

  Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG

  Language:Python196

• TreeCmp/TreeCmp

  TreeCmp: comparison of trees in polynomial time

  Language:Java125

• maasha/biopieces

  Biopieces is a bioinformatic framework of tools easily used and easily created.

  Language:Perl14123

• thackl/cross-species-scaffolding

  Super-scaffolding of draft genome assemblies with in silico mate-pair libraries derived from (closely) related references

  Language:Shell82

• bcgsc/abyss

  :microscope: Assemble large genomes using short reads

  Language:C++313108

• roblanf/minion_qc

  Quality control for MinION sequencing data

  Language:R21341

• Nextomics/NextPolish

  Fast and accurately polish the genome generated by long reads.

  21328

• dzerbino/velvet

  Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Research, 18: 821-829

  Language:C283100

• mikolmogorov/Flye

  De novo assembler for single molecule sequencing reads using repeat graphs

  Language:C791168

• marbl/Mash

  Fast genome and metagenome distance estimation using MinHash

  Language:C++39390

• nickjcroucher/gubbins

  Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

  Language:Python17551

• tseemann/snp-dists

  Pairwise SNP distance matrix from a FASTA sequence alignment

  Language:C12828

• microsoft/c9-python-getting-started

  Sample code for Channel 9 Python for Beginners course

  Language:Jupyter Notebook7.8k2.3k

• apachecn/ai-roadmap

  ApacheCN AI 路线图（知识树）

  Language:Shell2.3k489

• joemccann/dillinger

  The last Markdown editor, ever.

  Language:HTML8k1.1k

• elvirbrk/NoteHighlight2016

  Source code syntax highlighting for OneNote 2016 and OneNote for O365 . NoteHighlight 2013 port for OneNote 2016 (32-bit and 64-bit)

  Language:C#3.8k393

• dePamphilis/Cuscuta_HGT_ms_code

  Stolen genes in parasitic plants: convergent horizontal transfer and crosstalk of mobile nucleic acids

  Language:Python82

• apachecn/mit-18.06-linalg-notes

  MIT 18.06 线性代数笔记

  Language:JavaScript2.2k728

• ejfresch/saturnV

  Language:Perl5

• shenwei356/seqkit

  A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

  Language:Go1.3k159

• Eslam-Samir-Ragab/Sequence-database-curator

  This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).

  Language:Python154

• 3b1b/manim

  Animation engine for explanatory math videos

  Language:Python71.4k6.3k

• bpp/bpp

  Bayesian analysis of genomic sequence data under the multispecies coalescent model

  Language:C9227

• philippbayer/orthomclToVenn

  Creates Venn diagrams for OrthoMCL output

  Language:Python177

• konstantint/matplotlib-venn

  Area-weighted venn-diagrams for Python/matplotlib

  Language:Jupyter Notebook51868

• BioEasy/EasyCodeML

  EasyCodeML: A visual tool for analysis of selection using CodeML

  Language:C7820

• ablab/spades

  SPAdes Genome Assembler

  Language:C++763139

• sanger-pathogens/circlator

  A tool to circularize genome assemblies

  Language:Python23360

• broadinstitute/pilon

  Pilon is an automated genome assembly improvement and variant detection tool

  Language:Scala34260

• ruanjue/smartdenovo

  Ultra-fast de novo assembler using long noisy reads

  Language:C13030