biosustain/Maud
Enzyme models that take into account kinetics, allostery and thermodynamics
PythonGPL-3.0
Issues
- 0
Test case with N_edge > N_enzyme
#471 opened by teddygroves - 1
- 0
non-equimolar conserved moieties no implemented
#468 opened by NicholasCowie - 1
Separate docs and development dependencies
#466 opened by carrascomj - 0
Safety error in tox for jinja
#467 opened by NicholasCowie - 0
Init free dGfs properly
#462 opened by carrascomj - 0
Build wheels for apple silicon
#464 opened by teddygroves - 0
Model without unbalanced metabolites
#460 opened by carrascomj - 0
MCA
#438 opened by teddygroves - 0
Move back to JSON
#456 opened by NicholasCowie - 0
Expand troubleshooting documentation
#443 opened by teddygroves - 0
Fix any parameter
#442 opened by teddygroves - 0
E. coli glycolysis example input
#441 opened by teddygroves - 0
Add case study to documentation
#440 opened by teddygroves - 0
Update methionine input
#439 opened by teddygroves - 1
- 2
Generated idata fails to be deserialized
#421 opened by carrascomj - 0
- 0
Make some hard coded numbers configurable
#383 opened by teddygroves - 1
Test case for irreversible mechanism
#389 opened by teddygroves - 0
Pathway visualisation
#356 opened by teddygroves - 0
Copy error on fresh install
#437 opened by teddygroves - 0
Merge non_steady config
#435 opened by carrascomj - 0
Steady state deviation in the likelihood
#433 opened by carrascomj - 0
- 1
ImportError: cannot import name 'methionine' from 'maud.data.example_inputs' (unknown location)
#429 opened by janisshin - 4
Bug: can't differentiate between allosteric activators or inhibitors via allostery ID
#397 opened by NicholasCowie - 1
- 1
Better errors for generated inits
#392 opened by carrascomj - 0
Versioning
#359 opened by teddygroves - 1
- 1
Simple Methionine DOE
#316 opened by teddygroves - 0
Multi-compartment membrane potential
#391 opened by carrascomj - 1
Decide whether to fall back to the bdf solver.
#357 opened by teddygroves - 3
BUG: Incorrect working directory
#371 opened by carrascomj - 0
Adjoint Algebraic hybrid
#368 opened by NicholasCowie - 0
Adjoint ODE
#328 opened by teddygroves - 2
Debug methionine and glycolysis models
#342 opened by teddygroves - 1
Easier simulation
#314 opened by teddygroves - 0
Improve plotting
#317 opened by teddygroves - 0
Irreversible reactions
#319 opened by teddygroves - 0
Better way of handling Maud inputs
#321 opened by teddygroves - 0
Multi-functional enzymes
#327 opened by teddygroves - 0
Pooled metabolite measurements
#313 opened by teddygroves - 0
Prior value in posterior plots
#346 opened by ShannaraTP - 0
Add netcdf file to Maud output
#347 opened by teddygroves - 0
Add environment information to the output folder
#341 opened by teddygroves - 0
Easy way to generate csv templates
#320 opened by teddygroves - 0
Update linear model for maud sample test
#330 opened by ShannaraTP - 1
Telemetry
#315 opened by teddygroves