bjing2016/alphaflow

Multimer

Closed this issue · 2 comments

MaciejMajew commented

Hi! Great work!
Is multimer supported as in ESMFold?
I was trying to use a separation token ":" as in ESM but it doesn't seem to work.

bjing2016 commented

We do not currently support ESM-style ":" tokens, but internally in ESMFold they are converted to linker sequences, which you can add manually. See https://github.com/facebookresearch/esm/blob/main/esm/esmfold/v1/misc.py#L18.
In the future we may add direct support for multimer inputs.

  • 👍1
  • 👀1
MaciejMajew commented

Thanks, I will try that solution for now.