bluegreen-labs/phenor

Functions in the demo files don't match the functions in Phenor

catubela opened this issue · 2 comments

catubela commented

Perhaps I have missed something important here (I'm relatively new to R) but the functions used in the demo_data.R file like 'format_pep725' are not listed within the package? How many of the functions have changed from the version on Phenor used in your paper cited?
Many thanks.

khufkens commented

All of them, the package was refactored for consistency and ROpenSci compliance.

If you want the old setup use release version 1, as mentioned in the installation instructions.

https://bluegreen-labs.github.io/phenor/#installation

https://github.com/bluegreen-labs/phenor/releases/tag/v1.0

All functions were mostly just renamed so you should be able to go through the help files / index to figure out what you need (is equivalent to any old demo code).

https://bluegreen-labs.github.io/phenor/reference/index.html

catubela commented

Thank you. I don't know how I missed the Version1 comment on github.