bnicenboim/bcogsci

getting a lot of warnings about the new references

bnicenboim opened this issue · 3 comments

bnicenboim commented 
Warning in safe_cite(keys, bibs, textual = textual, before = before, after = after,  :
  possibly non-existing or duplicated key(s) in bib file from package 'bcogsci':
    DillonEtAl2013

Warning in safe_cite(keys, bibs, textual = textual, before = before, after = after,  :
  possibly non-existing or duplicated key(s) in bib file from package 'bcogsci':
    DillonEtAl2013

Warning in `[.bibentry`(be, cur) :
  subscript out of bounds (DillonEtAl2013' from package 'bcogsci')
Warning in `[.bibentry`(be, cur) : subscript out of bounds
Warning in safe_cite(keys, bibs, textual = textual, before = before, after = after,  :
  possibly non-existing or duplicated key(s) in bib file from package 'bcogsci':
    FrankEtAl2015

Warning in safe_cite(keys, bibs, textual = textual, before = before, after = after,  :
  possibly non-existing or duplicated key(s) in bib file from package 'bcogsci':
    FrankEtAl2015

Warning in `[.bibentry`(be, cur) :
  subscript out of bounds (FrankEtAl2015' from package 'bcogsci')
Warning in `[.bibentry`(be, cur) : subscript out of bounds
Warning in safe_cite(keys, bibs, textual = textual, before = before, after = after,  :
  possibly non-existing or duplicated key(s) in bib file from package 'bcogsci':
    VSLK08

Warning in safe_cite(keys, bibs, textual = textual, before = before, after = after,  :
  possibly non-existing or duplicated key(s) in bib file from package 'bcogsci':
    VSLK08

Warning in `[.bibentry`(be, cur) :
  subscript out of bounds (VSLK08' from package 'bcogsci')
Warning in `[.bibentry`(be, cur) : subscript out of bounds
Warning in get_bibentries(package = package, ..., stop_on_error = FALSE) :
  Couldn't find file REFERENCES.bib in package `lingpsych'
Warning in safe_cite(keys, bibs, textual = textual, before = before, after = after,  :
  possibly non-existing or duplicated key(s) in bib file from package 'lingpsych':
    VasishthetalPLoSOne2013

One of the problems here is that you're using the bib file of another package, which is not a dependency, so, it's not installed by default. Can you copy the relevant references from lingpsych into this package?
Then there seem to be some duplicates, and not sure what else...

vasishth commented

I will just fix it, give me a minute

vasishth commented

Seems to be installing fine now:

devtools::install_github("bnicenboim/bcogsci")
Downloading GitHub repo bnicenboim/bcogsci@HEAD
✓ checking for file ‘/private/var/folders/ds/fsl1v_v934v4j58c8b9m26jm0000gn/T/Rtmps0PAHa/remotes284e6e637e23/bnicenboim-bcogsci-a3aef87/DESCRIPTION’ ...
─ preparing ‘bcogsci’:
✓ checking DESCRIPTION meta-information ...
─ installing the package to process help pages
Loading required namespace: bcogsci
─ saving partial Rd database (707ms)
─ checking for LF line-endings in source and make files and shell scripts
─ checking for empty or unneeded directories
NB: this package now depends on R (>= 3.5.0)
WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: ‘bcogsci/data/df_VOTenglish.rda’ ‘bcogsci/data/df_VOTmandarin.rda’ WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: ‘bcogsci/data/df_buerki.rda’ ‘bcogsci/data/df_dillonE1.rda’ WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: ‘bcogsci/data/df_dillonrep.rda’ ‘bcogsci/data/df_discreteagrmt.rda’ WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: ‘bcogsci/data/df_dutch.rda’ ‘bcogsci/data/df_english.rda’ WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: ‘bcogsci/data/df_gibsonwu.rda’ ‘bcogsci/data/df_gibsonwu2.rda’ WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: ‘bcogsci/data/df_persianE1.rda’ ‘bcogsci/data/df_polarity.rda’ WARNING: Added dependency on R >= 3.5.0 because serialized objects in serialize/load version 3 cannot be read in older versions of R. File(s) containing such objects: ‘bcogsci/data/df_powerpose.rda’ ‘bcogsci/data/df_red.rda’
─ building ‘bcogsci_0.0.0.9000.tar.gz’

Welcome to R!

  • installing source package ‘bcogsci’ ...
    ** using staged installation
    ** R
    ** data
    *** moving datasets to lazyload DB
    ** inst
    ** byte-compile and prepare package for lazy loading

    Welcome to R!

    Goodbye!

** help
*** installing help indices
** building package indices

Welcome to R!

Goodbye!

** testing if installed package can be loaded from temporary location

Welcome to R!

Goodbye!

** testing if installed package can be loaded from final location

Welcome to R!

Goodbye!

** testing if installed package keeps a record of temporary installation path

  • DONE (bcogsci)

    Goodbye!

bnicenboim commented

yes, it works fine now