NAs are not allowed in subscripted assignments

[carbocation]

I have run my GWAS summary statistics through fizi --munge and fizi --impute without issue. However, when I bring them forward to FUSION for TWAS, I am getting the following error:

Error in sumstat$Z[qc$flip] = -1 * sumstat$Z[qc$flip] : 
  NAs are not allowed in subscripted assignments

I found this unexpected since munge and impute ran successfully. Is there additional filtering that needs to be done in addition to those steps?

[quattro]

Hi @carbocation , can you provide a bit more information? Are there any NA values in the imputed summary statistics?