Laboratory of Food Systems Biotechnology
FSB Lab, Institute of Food, Nutrition, and Health, D-HEST, ETH Zurich
Zurich, Switzerland
Pinned Repositories
advanced-comp-bio-tutorial
Hands-on demonstration of 16S rRNA gene sequence analysis for SysBio Advanced Block Course 2022
HPV-multiOmics
Multi-Omics Predictive Modelling of Cervicovaginal Microenvironment
nf-ducken
Workflow to process amplicon meta-analysis data, from NCBI accession IDs to taxonomic diversity metrics.
q2-assembly
QIIME 2 plugin for (meta)genome assembly.
q2-fondue
Functions for reproducibly Obtaining and Normalizing Data re-Used from Elsewhere
q2-moshpit
MOdular SHotgun metagenome Pipelines with Integrated provenance Tracking
q2-plugin-template
A skeleton for QIIME 2 plugins
q2-protein-pca
QIIME2 plugin for PCA analysis of protein sequence phylogeny.
q2-types-genomics
QIIME 2 types for genomics plugins.
RESCRIPt
REference Sequence annotation and CuRatIon Pipeline
Laboratory of Food Systems Biotechnology's Repositories
bokulich-lab/RESCRIPt
REference Sequence annotation and CuRatIon Pipeline
bokulich-lab/q2-fondue
Functions for reproducibly Obtaining and Normalizing Data re-Used from Elsewhere
bokulich-lab/q2-types-genomics
QIIME 2 types for genomics plugins.
bokulich-lab/advanced-comp-bio-tutorial
Hands-on demonstration of 16S rRNA gene sequence analysis for SysBio Advanced Block Course 2022
bokulich-lab/q2-assembly
QIIME 2 plugin for (meta)genome assembly.
bokulich-lab/HPV-multiOmics
Multi-Omics Predictive Modelling of Cervicovaginal Microenvironment
bokulich-lab/nf-ducken
Workflow to process amplicon meta-analysis data, from NCBI accession IDs to taxonomic diversity metrics.
bokulich-lab/q2-moshpit
MOdular SHotgun metagenome Pipelines with Integrated provenance Tracking
bokulich-lab/q2-plugin-template
A skeleton for QIIME 2 plugins
bokulich-lab/q2-protein-pca
QIIME2 plugin for PCA analysis of protein sequence phylogeny.
bokulich-lab/uzh-microbiome-tutorial
bokulich-lab/db-benchmarks-2020
Database benchmarks using RESCRIPt
bokulich-lab/FermDB
bokulich-lab/q2-amr
bokulich-lab/q2-coordinates
methods for geographic mapping of qiime2 artifact data or metadata
bokulich-lab/mishmash
bokulich-lab/q2-fondue-examples
Materials accompanying q2-fondue article.
bokulich-lab/q2-pinocchio
bokulich-lab/Fermented-Food-Ontologies
Substrate-based fermented food ontologies
bokulich-lab/cancer-microbiome-intervention-tutorial
JupyterBook for QIIME 2 FAES January 2022 workshop
bokulich-lab/DataVisualizationBook
JupyterBook on data visualization for Food Scientists.
bokulich-lab/fgcz-metagenomics-workshop
bokulich-lab/q2-amrfinderplus
bokulich-lab/q2-checkm
QIIME 2 plugin for assessing the quality of (meta)genomes using CheckM.
bokulich-lab/q2-exonerate
bokulich-lab/q2-kmerizer
QIIME 2 plugin for generating kmers from biological sequences
bokulich-lab/q2-viromics
bokulich-lab/q2-virsorter2
bokulich-lab/utilities
A collection of utilities used across repos.