bokulich-lab/q2-types-genomics

Issues

• Implement FeatureData[KEGG] type

  #10 opened 6 months ago by misialq
  0

• Implement FeatureData[NOG] type

  #8 opened 6 months ago by misialq
  0

• Implement FeatureData[OG] type

  #9 opened 6 months ago by misialq
  0

• add database validation to the Kraken2DB format

  #40 opened 2 years ago by misialq
  0

• ENH: Semantic type for HMMER database

  #63 opened 6 months ago by Sann5
  0

• ENH: introduce the `FeatureData[Contig]` semantic type

  #77 opened 9 months ago by misialq
  0

• ENH: add `sample_dict` method to the `MultiFASTADirectoryFormat` format

  #78 opened 9 months ago by misialq
  0

• ENH: Update `NCBITaxonomyDirFmt` to accomodate data-version file

  #72 opened 10 months ago by Sann5
  2

• ENH: Semantic Type for `fetch-busco-db`'s output

  #74 opened 10 months ago by Sann5
  0

• ENH: Semantic Type for taxa specific diamond DB

  #68 opened 10 months ago by Sann5
  0

• ENH: Semantic Type for NCBI protein-taxonomy data

  #66 opened a year ago by Sann5
  0

• add formats that make sample (or other) ids explicit

  #56 opened a year ago by gregcaporaso
  7

• ENH: add a `genome_dict` method on all `GenomeData`-linked formats

  #65 opened a year ago by misialq
  0

• ENH: Update Semantic Type for Diamond DB

  #64 opened a year ago by Sann5
  2

• ENH: add eggnog/diamond DB validation

  #58 opened a year ago by misialq
  0

• TypeError: BLAST6 is not a variant of SampleData.field['type']

  #47 opened a year ago by linlin-coder
  2

• Duplicate semantic type

  #52 opened a year ago by JankoSet
  1

• add formats/types required by Kaiju

  #44 opened a year ago by misialq
  0

• add `FeatureMap` and `FeatureMap[MAGtoContigs]` types

  #46 opened a year ago by misialq
  0

• Implement `BrackenDB` format/type

  #41 opened a year ago by misialq
  0

• Update CI to follow the other repos

  #31 opened 2 years ago by misialq
  0

• Implement SampleData[Contigs] type

  #1 opened 4 years ago by misialq
  0

• Implement SampleData[MAGs] type

  #2 opened 4 years ago by misialq
  0

• Add support for multi-file FASTA/GFF

  #3 opened 4 years ago by misialq
  0

• Implement SampleData[Bowtie2Index] type

  #4 opened 4 years ago by misialq
  0

• Implement GenomeData[Loci] type

  #5 opened 3 years ago by misialq
  0

• Implement GenomeData[Genes] type

  #6 opened 3 years ago by misialq
  0

• Implement GenomeData[Proteins] type

  #7 opened 3 years ago by misialq
  0

• Implement FeatureData[MAG] type

  #11 opened 3 years ago by misialq
  0