Pinned Repositories
AutoFocus
A basic ImageJ/Fiji plugin that take a fluorescent and brightfield confocal time course dataset and output the best focus of the brightfield and a Maximum Intensity Projection of the fluorescent channel.
codowik
now convert dokuwiki engine into a professional wiki with codowik template
Colour_Deconvolution
demo_monai
Example on how to use Monai
DOG
A Jython script for Fiji/ImageJ to perform Difference of Gaussian on fluorescent stack and plot the result
fiji_scripts
napari-particle-detection-analysis
Napari plugin to detect particle within cells and perform analysis
swc2tif
bpavie's Repositories
bpavie/napari-particle-detection-analysis
Napari plugin to detect particle within cells and perform analysis
bpavie/AutoFocus
A basic ImageJ/Fiji plugin that take a fluorescent and brightfield confocal time course dataset and output the best focus of the brightfield and a Maximum Intensity Projection of the fluorescent channel.
bpavie/swc2tif
bpavie/codowik
now convert dokuwiki engine into a professional wiki with codowik template
bpavie/Colour_Deconvolution
bpavie/demo_monai
Example on how to use Monai
bpavie/DOG
A Jython script for Fiji/ImageJ to perform Difference of Gaussian on fluorescent stack and plot the result
bpavie/fiji_scripts
bpavie/FijiJythonScripts
Some jython script for Fiji/ImageJ
bpavie/ijblob
Automatically exported from code.google.com/p/ijblob
bpavie/imglib2
A generic next-generation Java library for image processing
bpavie/microirods
A python utility to upload/download/get infor of data stored on an iRODS repository
bpavie/MIST
Microscopy Image Stitching Tool
bpavie/ML-course-VIB-2021
bpavie/mmqt
Microglia morphology quantification tool
bpavie/napari-destripe
bpavie/napari-segment-anything
Napari plugin of Segment Anything Model (SAM)
bpavie/napari-tomoslice
a napari plugin for visualising electron cryotomograms
bpavie/neuralnets
This code implements various useful utilities for training neural networks.
bpavie/nis2pyr
Python utility and library for converting Nikon .nd2 files to pyramidal OME TIFF.
bpavie/python_segmentation_notebooks
bpavie/qupath
QuPath - Open Source Digital Pathology
bpavie/Simple_Neurite_Tracer
The ImageJ framework for semi-automated tracing of neurons and tubular structures
bpavie/W_Nuclei-Seg-ImageJ