Pinned Repositories
brainglobe-atlasapi
A lightweight python module to interact with atlases for systems neuroscience
brainglobe-heatmap
Rendering anatomical heatmaps with brainrender and matplotlib
brainglobe-segmentation
Segmentation of anatomical structures in a common coordinate space
brainreg
Automated 3D brain registration with support for multiple species and atlases.
brainrender
a python based software for visualization of neuroanatomical and morphological data.
brainrender-napari
A napari plugin to render BrainGlobe atlases and associated data as layers.
cellfinder
Automated 3D cell detection in very large images
cellfinder-core
Standalone cellfinder cell detection algorithm
cellfinder-napari
Efficient cell detection in large images using cellfinder in napari
slicereg
A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
BrainGlobe's Repositories
brainglobe/brainrender
a python based software for visualization of neuroanatomical and morphological data.
brainglobe/cellfinder
Automated 3D cell detection in very large images
brainglobe/brainglobe-atlasapi
A lightweight python module to interact with atlases for systems neuroscience
brainglobe/brainreg
Automated 3D brain registration with support for multiple species and atlases.
brainglobe/brainglobe-heatmap
Rendering anatomical heatmaps with brainrender and matplotlib
brainglobe/brainglobe-segmentation
Segmentation of anatomical structures in a common coordinate space
brainglobe/cellfinder-napari
Efficient cell detection in large images using cellfinder in napari
brainglobe/brainrender-napari
A napari plugin to render BrainGlobe atlases and associated data as layers.
brainglobe/morphapi
A lightweight python package to download neuronal morphologies
brainglobe/brainreg-napari
Automated 3D brain registration in napari with support for multiple species and atlases.
brainglobe/brainglobe-napari-io
Read and write files from the BrainGlobe neuroanatomy suite
brainglobe/brainglobe-registration
Registration to BrainGlobe atlases in napari using Elastix
brainglobe/bg-atlasgen
Tools for packaging atlases for use with BrainGlobe
brainglobe/brainglobe-utils
Shared general purpose tools for the BrainGlobe project
brainglobe/brainglobe-meta
(Meta-)package repository for BrainGlobe's Python tools for computational neuroanatomy.
brainglobe/brainglobe.github.io
brainglobe.info website
brainglobe/imio
Loading and saving of image data.
brainglobe/brainglobe-workflows
Workflows that utilise BrainGlobe tools to perform data analysis and visualisation.
brainglobe/brainrender-docs
The docs for brainrender https://github.com/brainglobe/BrainRender
brainglobe/brainglobe-space
Anatomical space conventions made easy.
brainglobe/brainglobe-template-builder
Build unbiased anatomical templates from individual images
brainglobe/brainglobe-stitch
A napari plugin for stitching large tiled 3D imaging datasets
brainglobe/.github
Common templates for BrainGlobe repositories.
brainglobe/brainglobe-ccf-translator
A tool for translating between common coordinate frameworks using deformation matrices.
brainglobe/napari-experimental
brainglobe/micrometa
Parsing of whole-brain microscopy metadata
brainglobe/stack-to-chunk
Convert stacks of images to chunked datasets
brainglobe/course-whole-brain-microscopy-analysis
Materials for the Whole brain microscopy analysis with BrainGlobe and napari course
brainglobe/slides-neuropixels-aligning-spikes-histology
Slides for the UCL Neuropixels course - "Aligning spikes to histology with BrainGlobe"
brainglobe/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks