count data

Question

count data

Opened this issue 11 years ago · 3 comments

betareg or http://cran.r-project.org/web/packages/pscl/vignettes/countreg.pdf
see pscl http://www.jstatsoft.org/v27/i08/paper

weight by read depth.

Answer 1 · 2013-11-26T15:07:21.000Z

from the BiSeq package: We fit the beta regression model to the smoothed methylation levels at each CpG site and test for a group effect using the Wald test.

Answer 2 · 2013-11-26T18:19:32.000Z

glmmADMB with family="nbinom" also allows for random effects.

Answer 3 · 2013-11-27T16:42:31.000Z

see betareg::betamix with cluster arg.