Issues
- 1
gVCF input
#91 opened by zoeward-nz - 4
- 2
Inconsistent ancestry prediction of a sample using peddy on a cohort VCF and individual VCF
#90 opened by anjalijain22 - 8
KeyError in PCA.py
#48 opened by skgttjo - 1
Ancestry composition
#89 opened by RoniHaas - 3
custom sites
#88 opened by cartographerJ - 1
- 1
Parallel processing blocked
#86 opened by MattWellie - 3
samples in vcf not in ped
#85 opened by Giuseppe1995 - 4
Runtime for large datasets.
#84 opened by sdsilva10 - 7
peddy sex-check incorrect prediction
#74 opened by Fazulur - 2
Error during pip install peddy
#83 opened by lyj95618 - 4
No Hets found on numerous samples
#50 opened by AndrewSkelton - 5
Question about idr_baf
#82 opened by mingoo426 - 5
missing information in .peddy.ped
#71 opened by olneykimberly - 1
Report which variants were used?
#81 opened by bhanratt - 1
How many Snps used in the PCA ?
#80 opened by ymavura3 - 12
KeyError: 'keep' in peddy
#79 opened by liu7923 - 3
- 4
Matplotlib issue? 'c' argument looks like a single numeric RGB or RGBA sequence
#77 opened by julieefeusier - 2
- 7
- 2
Python version and libraries version incompatibility due to drop support for python 2.7
#70 opened by NikolaBio - 6
- 5
error loading tabix index
#72 opened by ccymak - 4
- 1
Library not loaded: @rpath/libdeflate.so
#64 opened by maksjutov - 3
- 1
Is Grch38 with chr prefix supported
#67 opened by henrikstranneheim - 6
- 0
Peddy error - RuntimeWarning
#65 opened by evagradovich - 0
- 1
- 2
- 1
ped file "missing phenotype"
#58 opened by svergult - 0
report 1kg sample names in json output.
#57 opened by brentp - 1
Explicitly enter duplicates in pedigree.
#55 opened by OgnjenMilicevic - 0
Running peddy with provided vcf and ped file
#54 opened by julien-kann - 2
peddy warning sampleID with leading zero
#52 opened by Fazulur - 2
Input PED file; replace sep with whitespace
#51 opened by jrouhana - 0
--Loglevel setting doesn't seem to work
#49 opened by vivianTan7 - 2
- 10
- 1
sex UNKNOWN
#43 opened by jeffverboon - 0
support VCFs with only genotypes
#41 opened by brentp - 4
process was killed, Memory Error.
#40 opened by wym0072003 - 5
IndexError: list index out of range
#39 opened by UmerMaqsood10 - 3
- 4
IndexError: list index out of range (ped file is tab seperated and matplotlib is also updated).
#35 opened by shiva-g - 2
Sex check error
#36 opened by nskbe