Setting deleteIntermediateOutputFiles=True with create_submission()
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kvg commented
I'm using the create_submission() method in the fiss API to submit jobs programmatically. From the response JSON, I see there's an option to have the workflow delete intermediate files:
...
"request": {
"deleteIntermediateOutputFiles": "False",
"entityName": "CDH5-11_Proband",
"entityType": "sample_set",
"memoryRetryMultiplier": 1,
"methodConfigurationName": "PBCLRWholeGenome",
"methodConfigurationNamespace": "production-long-reads",
"useCallCache": "True",
"useReferenceDisks": "False",
"userComment": "None"
},
"status": "Submitted",
"submissionDate": "2022-01-03T06:52:35.185Z",
...
Currently I think create_submission() can only set 'useCallCache'. Can the create_submission() method be updated to enable setting 'deleteIntermediateOutputFiles' option for new job submissions?