broadinstitute/fiss

`import firecloud.api` broken in Python 3.10

Closed this issue · 2 comments

amstilp commented

Python 3.10 changed the collections module, which breaks the firecloud/api.py file.

In a new venv with Python 3.10.2:

python -m venv venv
source venv/bin/activate
pip install --upgrade pip
pip install firecloud
python -c 'import firecloud.api as fapi'

gives this error:

Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/Users/amstilp/venv310/lib/python3.10/site-packages/firecloud/api.py", line 16, in <module>
    from collections import Iterable
ImportError: cannot import name 'Iterable' from 'collections' (/opt/local/Library/Frameworks/Python.framework/Versions/3.10/lib/python3.10/collections/__init__.py)

import firecloud.api as fapi works without error in Python 3.9.10.

DailyDreaming commented

I'm also having this issue. Seems like an easy fix. Since FISS seems to no longer be maintained, I may just move off of the FISS dependency and call the API directly then.

dheiman commented