broadinstitute/fiss

REARCH: finish changing high-level cmds (used from CLI) to not print to screen

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noblem commented

This effort is partially complete and has been discussed in the team. Being recorded here for completeness and as a reminder to finish. The issue is that many of the high-level commands were printing results to stdout, instead of passing them back as a return value. This limited the utility of the high-level interface to just the Unix CLI, but it's preferable to be able to call the high-level interface from Python code too.