burcakotlu
I like coding in java, python, and R. I'm working on bioinformatics, computational biology and statistical genomics. I like working with trees and graphs.
University of California San DiegoSan Diego, CA, USA
Pinned Repositories
SigProfilerMatrixGenerator
SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED file). The tool seamlessly integrates with other SigProfiler tools.
SigProfilerTopography
SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA replication, and DNA transcription on the activities of different mutational processes. SigProfilerTopography elucidates the unique topographical characteristics of mutational signatures.
SigProfilerTopographyCombined
Combines all the topography analyses of separate SigProfilerTopography runs on different cancer types
Collaborations
Collaborations for case studies of GLANET
GLANET
GLANET: Genomic Loci ANnotation and Enrichment Tool
GLANETBioinformatics
JOA
Joint Overlap Analyis of N Interval Sets
sklearn_tutorial
Materials for my scikit-learn tutorial
burcakotlu's Repositories
burcakotlu/GLANET
GLANET: Genomic Loci ANnotation and Enrichment Tool
burcakotlu/JOA
Joint Overlap Analyis of N Interval Sets
burcakotlu/Collaborations
Collaborations for case studies of GLANET
burcakotlu/GLANETBioinformatics
burcakotlu/sklearn_tutorial
Materials for my scikit-learn tutorial