Replicating BioBERT Results - Mortality Prediction

[kone807]

hello,

we are trying to run the mortality prediction scripts on BioBERT model, however, we are encountering errors wrt the tokenizer.

We also tried adding AutoTokenizer from hugging face in the tokenization.py file of FARM, but the error remained the same. Can you suggest us how can we go about using BioBERT here?

Thank you!

[bvanaken]

Hello,
thanks for reaching out!
From the error message it is unfortunately hard to tell where the error comes from. Can you give a bit more detail about which BioBERT (base or large) you are using and which parameters you pass to the training?