Pinned Repositories
coevolution
coevolution notebooks
eeg_competition
EnsemblRest
A Python interface to the Ensembl REST APIs, biological data at your fingertips.
phyloprofiling
phylo profile pipeline
psiblastWvalidation
use hhblits with psiblast to reign in divergent searches
Archaeal-Fusexins
Discovery of archaeal Fusexins homologous to eukaryotic HAP2/GCS1 gamete fusion proteins
f1000_profiling
a short tutorial on using OMA orthology and HOG data to characterize a conserved pathway
fold_tree
snakemake pipeline for creating trees from sequence sets
HogProf
Phylogenetic profiling with orthology data
RDF_Graphnet
cactuskid's Repositories
cactuskid/phyloprofiling
phylo profile pipeline
cactuskid/psiblastWvalidation
use hhblits with psiblast to reign in divergent searches
cactuskid/coevolution
coevolution notebooks
cactuskid/eeg_competition
cactuskid/EnsemblRest
A Python interface to the Ensembl REST APIs, biological data at your fingertips.
cactuskid/HHblits_profile_phylo
cactuskid/HMMphylogeny
cactuskid/IQ-TREE_struct
Efficient phylogenomic software by maximum likelihood with structure alphabets
cactuskid/KMER-spectra-and-Comp-genomics
cactuskid/machine-learning-sspred
some tests with secondary structure
cactuskid/meetingbot
cactuskid/MLFourier
fourier props of amino acids
cactuskid/mlSS
machinelearning secondary structure
cactuskid/NNPhysicalProps
physical properties of amino acids -> fourier
cactuskid/orthopipeline
a minhash based orthology prediction pipeline
cactuskid/struct_auto
cactuskid/structures_to_MSA
cactuskid/Taxonomy_scripts
some useful scripts I built for fetching taxonomic data and representing it on a species tree
cactuskid/toytree
A minimalist tree plotting library using toyplot graphs