Issues
- 3
mgatk did not detect homoplasmic mutations
#97 opened by chaiepi - 1
mgatk-del for other species: array length error
#96 opened by clee700 - 2
- 2
importMito error
#80 opened by FionaMoon - 2
“Error in checkGrep(grep(".A.txt", files))
#95 opened by Cesco16 - 2
Improper folder specification; file missing / extra file present. See documentation
#90 opened by isadeghi87 - 0
Missing output files
#92 opened by scontcast - 0
Config file (snake.scatter.yaml) not present
#94 opened by tybottorff - 6
- 0
- 4
missing output files
#70 opened by WeiWei060512 - 9
YAML dump errors
#84 opened by ollieeknight - 3
sumstatsBP_overlap.py failed to handle paired-end reads with unmatched length in the overlapped region.
#86 opened by Qirong-Lin - 4
mgatk-del-find fails in visualisation step
#77 opened by grasshoffm - 0
sumstatsBP_overlap.py failed to handle paired-end reads with unequal R1 and R2 lengths
#85 opened by Qirong-Lin - 2
cannot create regular file
#83 opened by FionaMoon - 1
Too many opened files
#81 opened by MagpiePKU - 3
What is per-position coverage?
#79 opened by FionaMoon - 6
`mgatk bcall` has trouble running
#65 opened by mrland99 - 0
Apply mgatk to scRNA-seq data
#78 opened by FionaMoon - 4
- 1
test_cli.py uses removed `md5` module
#68 opened by rekado - 1
- 5
- 2
Possible improvement on chunk_barcoded_bam.py
#73 opened by ruochiz - 6
Samtools index error
#72 opened by Hofphi - 2
No heteroplasmic mutations
#71 opened by VittoriaDBocchi - 8
- 19
Improper folder specification
#60 opened by dy-lin - 2
missing output files
#67 opened by gddhouse - 3
Error about Missing output files
#61 opened by ttab963 - 2
Cannot open workflow vignette
#66 opened by Suhoja - 3
mgatk-del-find won't run
#64 opened by mrland99 - 1
No cell names present in matrix
#62 opened by dy-lin - 4
Missing files for mgatk tenx
#59 opened by dy-lin - 1
multiple bam files with call mode
#57 opened by rtyags - 6
Error run mgatk
#56 opened by tianchen2019 - 4
Check does not work for Tenx input parameters.
#52 opened by grasshoffm - 2
Missing files in output final folder: *.variant_stats.tsv.gz *.cell_heteroplasmic_df.tsv.gz *.vmr_strand_plot.png
#53 opened by nmalwinka - 1
multiple samples
#55 opened by chrismahony - 1
- 15
checking dependencies...
#50 opened by kieraaleee - 19
Process 10x-scRNA-seq data using mgatk
#44 opened by pxh251 - 1
Using Mgatk for non mitochondrial sequences
#51 opened by suneetz - 2
Integrating multiple data
#47 opened by dawe - 3
- 0
NA
#49 opened by kieraaleee - 5
Improper folder specification
#46 opened by dawe - 5
Python unicode error
#45 opened by ollieeknight - 1
BioRad scATAC-seq data
#43 opened by liaojinyue