predictBatchPEPSTATS - no such file

[rpkarandev]

Greetings,

It would be great if you can help me figure out this error. I am trying to run ECPred on a bunch of sequences. However, I could not get it to run even for the sample fast file.

Main classes of input proteins are being predicted ...
Exception in thread "main" java.io.FileNotFoundException: ./temp/testResult/1673274969648/1.-.-.-/pepstats/temp.out (No such file or directory)
at java.base/java.io.FileInputStream.open0(Native Method)
at java.base/java.io.FileInputStream.open(FileInputStream.java:219)
at java.base/java.io.FileInputStream.(FileInputStream.java:157)
at java.base/java.io.FileInputStream.(FileInputStream.java:112)
at java.base/java.io.FileReader.(FileReader.java:60)
at fasta2Pepstats_noscale.parse_pepstats(fasta2Pepstats_noscale.java:66)
at predictBatchPEPSTATS.main(predictBatchPEPSTATS.java:68)
at runEC.predictions(runEC.java:49)
at ECPred.main(ECPred.java:108)

[alperendalkiran]

Hello,
Probably, the EMBOSS Pepstats tool is not working. Could you please share your run command with me?

[rpkarandev]

Thank you for the quick response. This is the command I used. I tried varying the temp folder (with/without '/' ).

java -jar ECPred.jar weighted ./sample.fasta ./ ./temp/ result_sample.tsv

[rpkarandev]

Reinstalling libgd lib and ECpred solved the issue.