cartersgenes's Stars
thinkaurelius/titan
Distributed Graph Database
tinkerpop/blueprints
A Property Graph Model Interface (no longer active - see Apache TinkerPop)
neo4jrb/activegraph
An active model wrapper for the Neo4j Graph Database for Ruby.
igvteam/igv
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
aaronpowell/db.js
db.js is a wrapper for IndexedDB to make it easier to work against
bionode/bionode
Modular and universal bioinformatics
hammerlab/vcf.js
A VCF parser and variant record model in JavaScript.
solvebio/solvebio-ruby
SolveBio Ruby bindings
huwenboshi/ImpG
Gaussian imputation of GWAS summary statistics
HAShihab/fathmm
The Functional Analysis through Hidden Markov Models Software and Server
tanghaibao/goatools
Python library to handle Gene Ontology (GO) terms
slowkow/snpsea
:bar_chart: Identify cell types and pathways affected by genetic risk loci.
capistrano/capistrano
A deployment automation tool built on Ruby, Rake, and SSH.
esamattis/underscore.string
String manipulation helpers for javascript
reddit-archive/reddit
historical code from reddit.com
chromakode/xkcd-pixels
The frontend code behind "Pixels".
GMOD/jbrowse
JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.
elastic/elasticsearch-river-wikipedia
Wikipedia River Plugin for elasticsearch (STOPPED)
elastic/elasticsearch-river-twitter
Twitter River Plugin for elasticsearch (STOPPED)
elastic/elasticsearch-river-rabbitmq
RabbitMQ River Plugin for elasticsearch (STOPPED)
knex/knex
A query builder for PostgreSQL, MySQL, CockroachDB, SQL Server, SQLite3 and Oracle, designed to be flexible, portable, and fun to use.
derryx/elasticsearch-changes-plugin
An Elasticsearch Plugin that notifies about changes to indices
jprante/elasticsearch-transport-websocket
WebSockets for ElasticSearch
sequelize/sequelize
Feature-rich ORM for modern Node.js and TypeScript, it supports PostgreSQL (with JSON and JSONB support), MySQL, MariaDB, SQLite, MS SQL Server, Snowflake, Oracle DB (v6), DB2 and DB2 for IBM i.
jlmakes/scrollreveal
Animate elements as they scroll into view.
bcbio/bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
samtools/htslib
C library for high-throughput sequencing data formats
samtools/bcftools
This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html
samtools/tabix
Note: tabix and bgzip binaries are now part of the HTSlib project.
vcflib/vcflib
C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings