Pinned Repositories
cookiecutter-my-lab-to-nwb-template
The standard cookiecutter template for all lab-specific NWB conversions.
ecogVIS
Time series visualizer and data processing tools for Electrocorticography (ECoG) signals stored in NWB files, for Python.
HDF5Zarr
Reading HDF5 files with Zarr
json-schema-to-dash-forms
JSON schema to Dash forms
lazy_ops
Lazy transposing and slicing of h5py and Zarr Datasets
neuroconv
Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.
nwb-conversion-tools
Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.
roiextractors
Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by SpikeInterface.
spike-sorting-hackathon
spikeinterface_cloud
CatalystNeuro's Repositories
catalystneuro/nwb-conversion-tools
Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.
catalystneuro/spike-sorting-hackathon
catalystneuro/axel-lab-to-nwb
NWB conversion scripts and tutorials. A collaboration with Axel Lab.
catalystneuro/mease-lab-to-nwb
catalystneuro/brody-lab-to-nwb
Repository for the NWB conversion and processing codes for the Brody lab.
catalystneuro/feldman-lab-to-nwb
Repository for the NWB conversion and processing codes for the Feldman lab.
catalystneuro/kriegstein-lab-to-nwb
catalystneuro/ndx-sound
NWB extension of sounds
catalystneuro/sleap-io
Standalone utilities for SLEAP pose tracking data.
catalystneuro/spikeextractors
Python-based module for extracting from, converting between, and handling recorded and spike sorted extracellular data from several file format.
catalystneuro/spikeinterface-chatbot
A chatbot service for spikeinterface documentation based on large language models
catalystneuro/allen-oephys-to-nwb
catalystneuro/chatgpt-retrieval-plugin
The ChatGPT Retrieval Plugin lets you easily search and find personal or work documents by asking questions in everyday language.
catalystneuro/cloud_and_containers_resources
Cloud and containers resources, documentations, etc...
catalystneuro/dandi-hub
Infrastructure and code for the dandihub
catalystneuro/distributed-coding-demo
catalystneuro/DLC2NWB
Utilities to convert DeepLabCut (DLC), output to/from Neurodata Without Borders (NWB) format.
catalystneuro/froemke-lab-to-nwb
catalystneuro/giocomo-lab-to-nwb
NWB conversion scripts and tutorials. A collaboration with Giocomo Lab.
catalystneuro/ndx-biosample
catalystneuro/ndx-extract
NWB extension for storage of parameters and output of EXTRACT pipeline
catalystneuro/ndx-hierarchical-behavioral-data
catalystneuro/ndx-ibl
Custom extension for special IBL neurodata types. Used in the ibl-lab-to-nwb project.
catalystneuro/ndx-nirs
An NWB extension for storing Near-Infrared Spectroscopy (NIRS) data
catalystneuro/ndx-pose
NWB extension to store pose estimation data
catalystneuro/ndx-probe-interface
Neurodata Without Borders (NWB) extension for probe shape information
catalystneuro/nwb-schema
Data format specification schema for the NWB neurophysiology data format
catalystneuro/oconnor-lab-to-nwb
catalystneuro/pynwb
A Python API for working with Neurodata stored in the NWB Format
catalystneuro/sleap
A deep learning framework for multi-animal pose tracking.